Topic: "bacteriophages"
refresh-bio/vclust
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) and clustering virus genomes and metagenomes
Language: Python - Size: 10.6 MB - Last synced at: about 1 month ago - Pushed at: 2 months ago - Stars: 85 - Forks: 4
Vini2/phables
🫧🧬 From fragmented assemblies to high-quality bacteriophage genomes
Language: Python - Size: 7.29 MB - Last synced at: 17 days ago - Pushed at: 10 months ago - Stars: 78 - Forks: 5
voorloopnul/awesome-phages
A curated list of phage related software and computational resources for phage scientists, bioinformaticians and enthusiasts.
Size: 16.6 KB - Last synced at: about 10 hours ago - Pushed at: about 3 years ago - Stars: 50 - Forks: 7
Dreycey/PhageScanner
A reconfigurable machine learning pipeline for labeling ORFs/proteins in bacteriophage genomes and metagenomic data.
Language: Jupyter Notebook - Size: 49.2 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 4 - Forks: 0
MGXlab/pvogs_function
A proof-of-concept, automated and reproducible pipeline for predicting functional associations between pVOGs.
Language: Python - Size: 909 KB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 2 - Forks: 0
refresh-bio/LZ-ANI
Fast and accurate tool for calculating Average Nucleotide Identity (ANI) among virus and bacteria genomes
Language: C++ - Size: 1.25 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0
Dreycey/PhageFilter
PhageFilter uses a Sequence Bloom Tree (SBT) to filter bacteriophage reads from metagenomic files.
Language: Rust - Size: 37.6 MB - Last synced at: 6 months ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0