Topic: "tronflow"
TRON-Bioinformatics/tronflow-mutect2
Nextflow pipeline for Mutect2 somatic variant calling best practices
Language: Nextflow - Size: 21.9 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 19 - Forks: 3
TRON-Bioinformatics/tronflow-alignment
Nextflow pipeline for BWA, BWA2 and STAR alignments
Language: Nextflow - Size: 22.7 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 11 - Forks: 2
TRON-Bioinformatics/tronflow-vcf-postprocessing
A Nextflow variant normalization pipeline based on vt and bcftools
Language: Shell - Size: 10.4 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 5 - Forks: 1
TRON-Bioinformatics/tronflow-bam-preprocessing
Nextflow pipeline for the preprocessing of BAM files based on GATK best practices. Marking duplicates, realignment around indels, base quality score recalibration (BQSR) and reporting of metrics are optional to maintain flexibility for different use cases.
Language: Nextflow - Size: 8.56 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 5 - Forks: 0
TRON-Bioinformatics/tronflow-haplotype-caller
A nextflow pipeline implementing GATK's HaplotypeCaller best practices
Language: Nextflow - Size: 9.14 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0
TRON-Bioinformatics/tronflow
TronFlow documentation
Language: Nextflow - Size: 476 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
TRON-Bioinformatics/tronflow-template
A template to develop new TronFlow pipelines
Language: Nextflow - Size: 20.8 MB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0