mutect2 | Topic | Ecosyste.ms: Repos

Topic: "mutect2"

Nextflow pipeline for Mutect2 somatic variant calling best practices

Language: Nextflow - Size: 21.9 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 19 - Forks: 3

secondary analysis pipelines parallelized with apache spark

Language: Scala - Size: 14 MB - Last synced at: 1 day ago - Pushed at: about 3 years ago - Stars: 16 - Forks: 12

GATK 4 Mutect2 Somático

Language: Shell - Size: 5.28 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 7 - Forks: 29

Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)

Language: Python - Size: 193 KB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 3 - Forks: 1

This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)

Language: Python - Size: 34.2 KB - Last synced at: over 1 year ago - Pushed at: about 3 years ago - Stars: 3 - Forks: 1

Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2

Language: Python - Size: 178 KB - Last synced at: 19 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 1

This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

Language: Shell - Size: 13.7 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

Reference pipeline for somatic SNP detection using BWA for mapping, Mutect2 for calling and Annovar for annotation

Size: 14.6 KB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 0

demo pipeline for testing different data chunking methods for MuTect2

Language: Nextflow - Size: 158 KB - Last synced at: about 2 months ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

Language: R - Size: 2.3 MB - Last synced at: over 1 year ago - Pushed at: about 8 years ago - Stars: 0 - Forks: 0