Topic: "variant-calls"
ga4gh/benchmarking-tools
Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls
Language: HTML - Size: 623 MB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 181 - Forks: 46
moiexpositoalonsolab/grenepipe
A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - for sampled individuals, and for pool sequencing.
Language: Python - Size: 99.9 MB - Last synced at: 13 days ago - Pushed at: 28 days ago - Stars: 96 - Forks: 22
Moduland/csv2vcf
🔧 Simple script in python to convert CSV files to VCF
Language: Python - Size: 810 KB - Last synced at: about 1 month ago - Pushed at: about 1 year ago - Stars: 71 - Forks: 23
lynnlangit/TeamTeri
Bioinformatics on GCP, AWS or Azure
Language: Shell - Size: 135 MB - Last synced at: 8 days ago - Pushed at: about 2 months ago - Stars: 56 - Forks: 17
dancooke/starfish
Intersect multiple VCF files with haplotype awareness
Language: Python - Size: 518 KB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 21 - Forks: 2
umccr/umccrise
:snake: DRAGEN Tumor/Normal workflow post-processing
Language: Python - Size: 138 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 19 - Forks: 8
CoreArray/PySeqArray
PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
Language: C++ - Size: 1.28 MB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 13 - Forks: 0
Yeaseen/GenericListCPP
An implementation of a generic ArrayList and a generic LinkedList in cpp which can store multiple data type variables.
Language: C++ - Size: 1.03 MB - Last synced at: 24 days ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 0
vinodscaria/COVID19variants
COVID-19 Variants Repository
Size: 6.64 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 1
oicr-gsi/gatk3
Language: Java - Size: 703 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
mgalardini/reads2snps
From second generation sequencing reads to variant calls
Language: Makefile - Size: 23.4 KB - Last synced at: over 1 year ago - Pushed at: over 9 years ago - Stars: 1 - Forks: 0
