Topic: "variation-graph"
vgteam/vg
tools for working with genome variation graphs
Language: C++ - Size: 150 MB - Last synced at: about 9 hours ago - Pushed at: about 10 hours ago - Stars: 1,185 - Forks: 204
MoMI-G/MoMI-G
Modular Multi-scale Integrated Genome Graph Browser
Language: TypeScript - Size: 9.33 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 84 - Forks: 6
ParBLiSS/PaSGAL
Parallel Sequence to Graph Alignment
Language: C++ - Size: 1.11 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 33 - Forks: 3
dubssieg/pancat
Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
Language: Python - Size: 1.72 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 31 - Forks: 1
algbio/GraphChainer
An accurate aligner of long reads to a variation graph, based on co-linear chaining
Language: C++ - Size: 305 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 25 - Forks: 3
edawson/svaha2
Linear-time, low-memory construction of variation graphs
Language: C++ - Size: 609 KB - Last synced at: 4 days ago - Pushed at: about 5 years ago - Stars: 20 - Forks: 0
w-gao/pgv
A web-based, interactive pangenome visualization tool
Language: TypeScript - Size: 1.15 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 16 - Forks: 0
SandraLouise/SVJedi-graph
SV genotyper for long reads with a variation graph
Language: Python - Size: 11.8 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 12 - Forks: 0
edawson/svaha
Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
Language: C++ - Size: 10.6 MB - Last synced at: 4 days ago - Pushed at: about 1 year ago - Stars: 12 - Forks: 1
dubssieg/rs-pancat-compare
Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.
Language: Rust - Size: 2.78 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 7 - Forks: 0
will-rowe/gfa
A Go library for working with Graphical Fragment Assembly format
Language: Go - Size: 43.9 KB - Last synced at: 10 months ago - Pushed at: almost 6 years ago - Stars: 6 - Forks: 1
JervenBolleman/handlegraph4jRDF
Handlegraph RDF writers in java for working with variation graph genome data.
Language: Java - Size: 46.9 KB - Last synced at: 26 days ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0
dubssieg/sharepg
Analysis of shared parts of a pangenome
Language: Python - Size: 22.5 KB - Last synced at: 8 months ago - Pushed at: 10 months ago - Stars: 2 - Forks: 0
dubssieg/gfagraphs
Library to parse, edit and handle in memory GFA graphs
Language: Python - Size: 290 KB - Last synced at: 11 days ago - Pushed at: 12 days ago - Stars: 1 - Forks: 1
dubssieg/pangenome-notes Fork of jackyzha0/quartz
Notes upon pangenome graphs construction
Language: TypeScript - Size: 8.64 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
jachansantiago/vg_recal
This is experiment to measure performance in vg recalibrate, testing different models.
Language: Jupyter Notebook - Size: 1.45 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
jlboat/VGTool Fork of Johanvb/VGTool
A tool for modelling graphs of genetic variation.
Language: Java - Size: 22.8 MB - Last synced at: over 1 year ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 1
