vessel-segmentation | Topic | Ecosyste.ms: Repos

Topic: "vessel-segmentation"

open-mmlab/mmsegmentation

OpenMMLab Semantic Segmentation Toolbox and Benchmark.

Language: Python - Size: 43.2 MB - Last synced at: 2 days ago - Pushed at: 10 months ago - Stars: 8,928 - Forks: 2,716

SharifAmit/RVGAN

[MICCAI'21] [Tensorflow] Retinal Vessel Segmentation using a Novel Multi-scale Generative Adversarial Network

Language: Python - Size: 243 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 74 - Forks: 22

sraashis/deepdyn

pytorch implementation of paper https://www.frontiersin.org/articles/10.3389/fcomp.2020.00035/full

Language: Jupyter Notebook - Size: 296 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 63 - Forks: 22

InsightSoftwareConsortium/ITKTubeTK

TubeTK is an open-source toolkit for the segmentation, registration, and analysis of tubes and surfaces in images, developed by Kitware, Inc.

Language: C++ - Size: 80.6 MB - Last synced at: 4 days ago - Pushed at: 2 months ago - Stars: 53 - Forks: 58

RUB-Bioinf/VesselExpress

🔬🖥 Automated Blood Vasculature Analysis of 3D Light-Sheet Image Volumes

Language: Python - Size: 53.6 MB - Last synced at: 4 months ago - Pushed at: 12 months ago - Stars: 43 - Forks: 6

moucheng2017/EM-BPL-Semi-Seg

[MICCAI 2022 Best Paper Finalist] Bayesian Pseudo Labels: Expectation Maximization for Robust and Efficient Semi Supervised Segmentation

Language: Python - Size: 4.25 MB - Last synced at: 18 days ago - Pushed at: 3 months ago - Stars: 39 - Forks: 1

sraashis/retinal-fundus-transfer

An example of easytorch implementation on retinal vessel segmentation.

Language: Python - Size: 101 MB - Last synced at: about 2 months ago - Pushed at: over 2 years ago - Stars: 26 - Forks: 5

DakaiZhou/Vessel-Segmentation-MR-Registration

The code in this repository is from my master thesis. This project aims to automatically segment carotid from 3D MR brain image, and use the segmented carotid to extract Time-Activity-Curve from PET images. It mainly involves 3D image coregistration, vessel segmentation, partial valume correction.

Language: MATLAB - Size: 533 KB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 23 - Forks: 6

Binjie-Qin/SVS-net

Sequential vessel segmentation via deep channel attention network

Language: Python - Size: 128 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 17 - Forks: 7

TY-Shi/AFN

Affinity Feature Strengthening for Accurate, Complete and Robust Vessel Segmentation(JBHI)

Language: Python - Size: 70.3 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 15 - Forks: 0

Sohambasu07/DR_2021

Diabetic Retinopathy Feature Extraction and Binary Diagnosis

Language: Jupyter Notebook - Size: 22.6 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 12 - Forks: 6

djin31/VesselExtract

U-net based CNN for segmenting blood vessel and thereafter removal of vessels from fundus image

Language: Jupyter Notebook - Size: 9.43 MB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 11 - Forks: 1

uw-biomedical-ml/oir

OIR Segmentation

Language: Lua - Size: 98.7 MB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 11 - Forks: 3

psweens/Vascular-TDA

Software to analyse the topology of vascular networks.

Language: Python - Size: 5.33 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 9 - Forks: 0

visionlyx/HP-VSP

A high-performance deep-learning-based pipeline for whole-brain vasculature segmentation at the capillary resolution

Language: Python - Size: 7.25 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 9 - Forks: 3

YueCui-Labs/FFCM-MRF

MATLAB GUIs for ToF-MRA data preprocessing, cerebrovascular segmentation and quantification

Language: MATLAB - Size: 24.5 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 6 - Forks: 1

aiporre/gcn_segmentation

Stroke-GFCN: segmentation of Ischemic brain lesions

Language: Jupyter Notebook - Size: 104 MB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 6 - Forks: 2

sinAshish/TreeDiffusion

[MICCAI 2024] TrIND: Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields

Language: Python - Size: 27.1 MB - Last synced at: 12 days ago - Pushed at: 12 months ago - Stars: 5 - Forks: 0

phkhanhtrinh23/vessel_segmentation

MultiResDenseUNet (SVOISP-2021-KH&KTMT-125) - Winner (3rd Prize) of The 10th Science and Technology Symposium for OISP Students. Ho Chi Minh City University Of Technology, Vietnam.

Language: Jupyter Notebook - Size: 1.13 GB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 5 - Forks: 0

jzsherlock4869/pytorch-unet-for-retina-vessel-segmentation

a simple and easy to follow pytorch implementation of U-net for retina vessel segmentation

Language: Python - Size: 624 KB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 5 - Forks: 1

eneSadi/Exploring-The-Limits-Of-Data-Augmentation-For-Retinal-Vessel-Segmentation

Code for our paper "Exploring The Limits Of Data Augmentation For Retinal Vessel Segmentation". https://arxiv.org/abs/2105.09365

Language: Jupyter Notebook - Size: 421 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 2

xslidi/BSEResU-Net

Official implementation of "BSEResU-Net: An attention-based before-activation residual U-Net for retinal vessel segmentation"

Language: Python - Size: 1.07 MB - Last synced at: almost 2 years ago - Pushed at: about 4 years ago - Stars: 5 - Forks: 3

mcd8604/rvsc

Language: Python - Size: 87.7 MB - Last synced at: about 2 years ago - Pushed at: about 8 years ago - Stars: 5 - Forks: 1

R-Vessel-X/SlicerRVXVesselnessFilters

3D Slicer Vesselness Filters CLI Extension

Language: C++ - Size: 4.48 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 3 - Forks: 2

Binjie-Qin/RPCA-UNet

Robust PCA Unrolling Network for Super-resolution Vessel Extraction in X-ray Coronary Angiography

Language: Python - Size: 65.7 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 3 - Forks: 0

sfu-mial/TreeDiffusion

Official Code for "Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields"

Language: Python - Size: 35.5 MB - Last synced at: 12 days ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0

risc-mi/cerebral-artery-segmentation

Language: Python - Size: 23.7 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

TommyGiak/retinal_vessel_segmentation

Retinal's vessel segmentation with deep U-Net

Language: Python - Size: 110 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0

kartikprabhu20/DS6 Fork of soumickmj/DS6

DS6: Deformation-aware learning for small vesselsegmentation with small, imperfectly labeled dataset

Size: 21.5 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0