Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: prodigal

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/prodigal

Dependent Repos 25

oschwengers/platon
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
  • >=2.6.3 environment.yml

Size: 37.4 MB - Last synced: about 1 month ago - Pushed: 8 months ago

metashot/docker
Metashot docker images
  • dockerfiles/anvio/7-1/environment.yml

Size: 1.35 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

bassiousmaximus/bvcn-binder-lesson1
  • environment.yml

Size: 3.2 MB - Last synced: 10 months ago - Pushed: about 3 years ago

davidlevybooth/Rhodococcus_Transcriptomics
Rhodococcus Transcriptomic Pipeline
  • 2.6.3.* environment.yaml

Size: 21.5 KB - Last synced: over 1 year ago - Pushed: about 5 years ago

LPCDRP/hybran
Hybrid reference-based and ab initio annotation of prokaryotic genomes https://lpcdrp.gitlab.io/hybran/
  • environment.yml

Last synced: 11 months ago

HanneloreH/PROJECTHH
Traineeship Howest BIT@HOME Hannelore Hamerlinck
  • 2.6.3.* Scripts/archive/ExistingFlows/mag-master/environment.yml

Size: 653 MB - Last synced: 10 months ago - Pushed: over 1 year ago

ikmb/MAGScoT
MAGScoT - a MAG scoring and refinement tool
  • environment.yml

Size: 28.7 MB - Last synced: 10 months ago - Pushed: 10 months ago

scilifelab-lts/lts-workflows-sm-metagenomics
  • lts_workflows_sm_metagenomics/envs/environment.yaml

Size: 428 MB - Last synced: over 1 year ago

scilifelab-lts/m_dopson_1701
  • 2.6.3.* envs/environment.yaml

Size: 46.2 MB - Last synced: over 1 year ago

bacpop/BacQuerya-processing
Scripts to process publicly available information for indexing.
  • environment.yml

Size: 36.4 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

scilifelab-lts/b_henriques-normark_1606
  • 2.6.3 bianca-env/environment.yml
  • 2.6.2 envs/environment.yaml

Size: 30.6 MB - Last synced: over 1 year ago

HobnobMancer/pyrewton
Python package for the identification of comprehensive CAZyomes of candidate species
  • 2.6.3 environment.yml

Size: 102 MB - Last synced: about 2 months ago - Pushed: 5 months ago

BackofenLab/CRISPRtracrRNA
  • 2.6.3 environment.yml

Size: 28.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

vinisalazar/BioProv
A provenance library for bioinformatics workflows 🧬 🔀 📝
  • environment.yml

Size: 12.4 MB - Last synced: 10 days ago - Pushed: over 2 years ago

scilifelab-lts/nbis-mags
  • envs/environment.yaml

Size: 795 KB - Last synced: over 1 year ago

KennthShang/PhaGCN
GCN classifier for phage taxanomy classification
  • 2.6.3 environment.yaml

Size: 54.4 MB - Last synced: 7 months ago - Pushed: almost 1 year ago

peterk87/viral_verify
  • 2.6.3.* environment.yml

Size: 1.95 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

genomewalker/aMGSIM
aMGSIM is an extension of MGSIM to create simulated ancient metagenome reads in multiple microbial synthetic communities.
  • environment.yml

Size: 24.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

KwanLab/metaBenchmarks
Repository containing metagenomics benchmarking modules
  • taxon_binning/environment.yml

Size: 2.95 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

WrightonLabCSU/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
  • environment.yaml

Size: 4.81 MB - Last synced: 16 days ago - Pushed: 5 months ago

nekokoe/Plasmer
An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.
  • 2.6.3 environment.yaml

Size: 128 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.
  • 2.6.3 environment.yaml

Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago

liaoherui/StrainAnalyze
StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.
  • 2.6.3 environment.yaml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

bioinformatics-lab/scratch
  • 2.6.3 environment.yml

Size: 10.8 MB - Last synced: about 1 year ago - Pushed: about 6 years ago

bioinformatics-lab/BioDragon
  • 2.6.3 environment.yml

Size: 10.9 MB - Last synced: about 1 year ago - Pushed: over 6 years ago

davidlevybooth/Praxis
  • 2.6.3.* envs/environment.yaml

Size: 137 KB - Last synced: over 1 year ago - Pushed: over 3 years ago

Arkadiy-Garber/bvcn-binder-hmmgenie
Learn about how to contribute your own Genie to the MagicCave toolkit
  • 2.6.3.* environment.yml

Size: 79.6 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

Arkadiy-Garber/bvcn-binder-pseudofinder
  • 2.6.3.* environment.yml

Size: 33.5 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

anttonalberdi/holoflow
Bioinformatics pipeline for hologenomics data generation and analysis
  • workflows/metagenomics/assembly_based/environment.yaml

Size: 1.34 MB - Last synced: 7 months ago - Pushed: over 2 years ago

elinneb/596-15-shotgun-seq-functions-binder
  • environment.yml

Size: 103 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

UFFeScience/bioprov
  • environment.yml

Size: 12.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

Arkadiy-Garber/bvcn-binder-magiclamp
Tutorial for the MagicCave toolkit
  • 2.6.3.* environment.yml

Size: 27.5 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

AstrobioMike/bvcn-prodigal-binder
  • environment.yml

Size: 9.77 KB - Last synced: about 1 year ago - Pushed: about 4 years ago

ericcapo/marky-coco
Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes
  • 2.6.3 environment.yml

Size: 4.4 MB - Last synced: 2 months ago - Pushed: 3 months ago

sjmsjyw/DRAM Fork of WrightonLabCSU/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
  • environment.yaml

Size: 3.94 MB - Last synced: 11 months ago - Pushed: over 1 year ago

rmcolq/RNA_virus_detector Fork of GreyGuoweiChen/RNA_virus_detector
VirBot: a protein-based RNA virus detector for metagenomic data
  • environment.yml

Size: 30.4 MB - Last synced: 6 months ago - Pushed: 6 months ago

alarawms/sunbeam Fork of sunbeam-labs/sunbeam
A robust, extensible metagenomics pipeline
  • environment.yml

Size: 1.3 MB - Last synced: 11 days ago - Pushed: about 4 years ago

merenlab/anvio
An analysis and visualization platform for 'omics data
  • .conda/environment.yaml

Size: 715 MB - Last synced: about 1 month ago - Pushed: about 2 months ago

Yasas1994/phage_contig_annotator
Annotates genes on putative phage contigs with protein orthologous groups using PHROGs
  • environment.yml

Size: 158 KB - Last synced: 22 days ago - Pushed: 22 days ago

nf-core/metatdenovo
Assembly and annotation of metatranscriptomic data, both prokaryotic and eukaryotic.
  • 2.6.3.* modules/nf-core/prodigal/environment.yml

Size: 12.7 MB - Last synced: 5 months ago - Pushed: 5 months ago

bobeobibo/phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages
  • environment.yml

Size: 6.8 MB - Last synced: 2 days ago - Pushed: 5 months ago

KwanLab/Autometa
Autometa: Automated Extraction of Genomes from Shotgun Metagenomes
  • tests/environment.yml

Size: 79 MB - Last synced: about 3 hours ago - Pushed: about 6 hours ago

guangyaoguo/DeepMetaBin
  • 2.6.3 environment.yml

Size: 3.12 MB - Last synced: 19 days ago - Pushed: 19 days ago

nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
  • 2.6.3.* modules/nf-core/prodigal/environment.yml

Size: 146 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

evo-design/evo
DNA foundation modeling from molecular to genome scale
  • environment.yml

Size: 8.58 MB - Last synced: 10 days ago - Pushed: about 1 month ago

GreyGuoweiChen/VirBot
VirBot: a protein-based RNA virus detector for metagenomic data
  • >=2.6.3 environment.yml

Size: 21.5 MB - Last synced: 26 days ago - Pushed: 26 days ago