Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: prodigal
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/prodigal
Dependent Repos 25
oschwengers/platon
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.- >=2.6.3 environment.yml
Size: 37.4 MB - Last synced: about 1 month ago - Pushed: 8 months ago
metashot/docker
Metashot docker images- dockerfiles/anvio/7-1/environment.yml
Size: 1.35 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
bassiousmaximus/bvcn-binder-lesson1
- environment.yml
Size: 3.2 MB - Last synced: 10 months ago - Pushed: about 3 years ago
davidlevybooth/Rhodococcus_Transcriptomics
Rhodococcus Transcriptomic Pipeline- 2.6.3.* environment.yaml
Size: 21.5 KB - Last synced: over 1 year ago - Pushed: about 5 years ago
LPCDRP/hybran
Hybrid reference-based and ab initio annotation of prokaryotic genomes https://lpcdrp.gitlab.io/hybran/- environment.yml
Last synced: 11 months ago
HanneloreH/PROJECTHH
Traineeship Howest BIT@HOME Hannelore Hamerlinck- 2.6.3.* Scripts/archive/ExistingFlows/mag-master/environment.yml
Size: 653 MB - Last synced: 10 months ago - Pushed: over 1 year ago
ikmb/MAGScoT
MAGScoT - a MAG scoring and refinement tool- environment.yml
Size: 28.7 MB - Last synced: 10 months ago - Pushed: 10 months ago
scilifelab-lts/lts-workflows-sm-metagenomics
- lts_workflows_sm_metagenomics/envs/environment.yaml
Size: 428 MB - Last synced: over 1 year ago
scilifelab-lts/m_dopson_1701
- 2.6.3.* envs/environment.yaml
Size: 46.2 MB - Last synced: over 1 year ago
bacpop/BacQuerya-processing
Scripts to process publicly available information for indexing.- environment.yml
Size: 36.4 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago
scilifelab-lts/b_henriques-normark_1606
- 2.6.3 bianca-env/environment.yml
- 2.6.2 envs/environment.yaml
Size: 30.6 MB - Last synced: over 1 year ago
HobnobMancer/pyrewton
Python package for the identification of comprehensive CAZyomes of candidate species- 2.6.3 environment.yml
Size: 102 MB - Last synced: about 2 months ago - Pushed: 5 months ago
BackofenLab/CRISPRtracrRNA
- 2.6.3 environment.yml
Size: 28.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
vinisalazar/BioProv
A provenance library for bioinformatics workflows 🧬 🔀 📝- environment.yml
Size: 12.4 MB - Last synced: 10 days ago - Pushed: over 2 years ago
KennthShang/PhaGCN
GCN classifier for phage taxanomy classification- 2.6.3 environment.yaml
Size: 54.4 MB - Last synced: 7 months ago - Pushed: almost 1 year ago
peterk87/viral_verify
- 2.6.3.* environment.yml
Size: 1.95 MB - Last synced: about 1 month ago - Pushed: over 1 year ago
genomewalker/aMGSIM
aMGSIM is an extension of MGSIM to create simulated ancient metagenome reads in multiple microbial synthetic communities.- environment.yml
Size: 24.5 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
KwanLab/metaBenchmarks
Repository containing metagenomics benchmarking modules- taxon_binning/environment.yml
Size: 2.95 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
WrightonLabCSU/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes- environment.yaml
Size: 4.81 MB - Last synced: 16 days ago - Pushed: 5 months ago
nekokoe/Plasmer
An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.- 2.6.3 environment.yaml
Size: 128 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.- 2.6.3 environment.yaml
Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago
liaoherui/StrainAnalyze
StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.- 2.6.3 environment.yaml
Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
bioinformatics-lab/scratch
- 2.6.3 environment.yml
Size: 10.8 MB - Last synced: about 1 year ago - Pushed: about 6 years ago
bioinformatics-lab/BioDragon
- 2.6.3 environment.yml
Size: 10.9 MB - Last synced: about 1 year ago - Pushed: over 6 years ago
davidlevybooth/Praxis
- 2.6.3.* envs/environment.yaml
Size: 137 KB - Last synced: over 1 year ago - Pushed: over 3 years ago
Arkadiy-Garber/bvcn-binder-hmmgenie
Learn about how to contribute your own Genie to the MagicCave toolkit- 2.6.3.* environment.yml
Size: 79.6 MB - Last synced: about 1 year ago - Pushed: about 4 years ago
Arkadiy-Garber/bvcn-binder-pseudofinder
- 2.6.3.* environment.yml
Size: 33.5 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
anttonalberdi/holoflow
Bioinformatics pipeline for hologenomics data generation and analysis- workflows/metagenomics/assembly_based/environment.yaml
Size: 1.34 MB - Last synced: 7 months ago - Pushed: over 2 years ago
elinneb/596-15-shotgun-seq-functions-binder
- environment.yml
Size: 103 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
UFFeScience/bioprov
- environment.yml
Size: 12.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
Arkadiy-Garber/bvcn-binder-magiclamp
Tutorial for the MagicCave toolkit- 2.6.3.* environment.yml
Size: 27.5 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
AstrobioMike/bvcn-prodigal-binder
- environment.yml
Size: 9.77 KB - Last synced: about 1 year ago - Pushed: about 4 years ago
ericcapo/marky-coco
Ready-to-use pipeline to detect, count and identify the hgcAB genes, involved in mercury methylation, from metagenomes- 2.6.3 environment.yml
Size: 4.4 MB - Last synced: 2 months ago - Pushed: 3 months ago
sjmsjyw/DRAM Fork of WrightonLabCSU/DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes- environment.yaml
Size: 3.94 MB - Last synced: 11 months ago - Pushed: over 1 year ago
rmcolq/RNA_virus_detector Fork of GreyGuoweiChen/RNA_virus_detector
VirBot: a protein-based RNA virus detector for metagenomic data- environment.yml
Size: 30.4 MB - Last synced: 6 months ago - Pushed: 6 months ago
alarawms/sunbeam Fork of sunbeam-labs/sunbeam
A robust, extensible metagenomics pipeline- environment.yml
Size: 1.3 MB - Last synced: 11 days ago - Pushed: about 4 years ago
merenlab/anvio
An analysis and visualization platform for 'omics data- .conda/environment.yaml
Size: 715 MB - Last synced: about 1 month ago - Pushed: about 2 months ago
Yasas1994/phage_contig_annotator
Annotates genes on putative phage contigs with protein orthologous groups using PHROGs- environment.yml
Size: 158 KB - Last synced: 22 days ago - Pushed: 22 days ago
nf-core/metatdenovo
Assembly and annotation of metatranscriptomic data, both prokaryotic and eukaryotic.- 2.6.3.* modules/nf-core/prodigal/environment.yml
Size: 12.7 MB - Last synced: 5 months ago - Pushed: 5 months ago
bobeobibo/phigaro
Phigaro is a scalable command-line tool for predicting phages and prophages- environment.yml
Size: 6.8 MB - Last synced: 2 days ago - Pushed: 5 months ago
KwanLab/Autometa
Autometa: Automated Extraction of Genomes from Shotgun Metagenomes- tests/environment.yml
Size: 79 MB - Last synced: about 3 hours ago - Pushed: about 6 hours ago
guangyaoguo/DeepMetaBin
- 2.6.3 environment.yml
Size: 3.12 MB - Last synced: 19 days ago - Pushed: 19 days ago
nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!- 2.6.3.* modules/nf-core/prodigal/environment.yml
Size: 146 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
evo-design/evo
DNA foundation modeling from molecular to genome scale- environment.yml
Size: 8.58 MB - Last synced: 10 days ago - Pushed: about 1 month ago
GreyGuoweiChen/VirBot
VirBot: a protein-based RNA virus detector for metagenomic data- >=2.6.3 environment.yml
Size: 21.5 MB - Last synced: 26 days ago - Pushed: 26 days ago