Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: pypi: javabridge

Python wrapper for the Java Native Interface
33 versions
Latest release: almost 4 years ago
4 dependent packages
1,706 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/javabridge

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/CellProfiler%2Fpython-javabridge

Dependent Repos 69

sudarsun/tomboost
A topic modeling based boosting approach to class imbalance learning
  • ==1.0.18 requirements.txt

Size: 1.39 MB - Last synced: 10 months ago - Pushed: over 1 year ago

GulzarAhmedButt/Python-Weka-Project
  • ==1.0.18 requirements.txt

Size: 9.65 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

jakob-tu/zebrafishframework
  • ==1.0.17 requirements.txt

Size: 1.83 MB - Last synced: 12 months ago - Pushed: over 1 year ago

aronsar/ganabi
  • ==1.0.18 TwoStageTransfer/requirements.txt

Size: 395 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

QBI-Microscopy/BatchCrop
An application for batch cropping of serial sections from the slide scanner
  • ==1.0.18 requirements_mac.txt

Size: 5.81 MB - Last synced: about 2 months ago - Pushed: 3 months ago

mahsa-sa/pyfish
  • ==1.0.17 requirements.txt

Size: 1.84 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

PolusAI/image-tools
  • ==1.0.18 transforms/images/polus-binary-operations-plugin/src/requirements.txt

Size: 62.6 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

madebypixel02/Machine-Learning-Pacman
[Uc3m] The Classic ghost-eating game
  • ==1.0.16 requirements.txt

Size: 16.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

amcrabtree/tumor-finder
A framework for training ML models for tumor recognition on H&E WSIs
  • ==1.0.16 env/environment.yml

Size: 509 KB - Last synced: 7 months ago - Pushed: over 1 year ago

chunglabmit/leica2tif
A quick command-line tool to convert Leica files to TIF.
  • * environment.yaml
  • * setup.py

Size: 10.7 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

cudmore/bImPy
A multi-dimensional image viewer and annotation tool
  • * requirements-bioformats.txt
  • * setup.py

Size: 135 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

frankligy/SNAF
Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation
  • ==1.0.14 AltAnalyze/requirements_all.txt

Size: 86.6 MB - Last synced: 1 day ago - Pushed: about 1 month ago

wangqianwen0418/DiscriLens
  • ==1.0.18 py/requirements.txt

Size: 98.2 MB - Last synced: 24 days ago - Pushed: about 1 year ago

corvideon/aitiaexplorer
Causal discovery and causal inference tool.
  • ==1.0.19 requirements.txt

Size: 54.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

aparnasherlekar/aparnasb
  • ==1.0.17 requirements.txt

Size: 5.12 MB - Last synced: 12 months ago - Pushed: over 1 year ago

Vishakha6/UNet-Python
  • ==1.0.19 requirements.txt

Size: 24.4 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

med-team/cellprofiler
Debian packaging for cellprofiler
  • * setup.py

Last synced: over 1 year ago

chuck-sys/genset-demo-site 📦
The website for demonstrating (and explaining) the GenSET project.
  • ==1.0.14 requirements.txt

Size: 116 KB - Last synced: 6 months ago - Pushed: about 3 years ago

MLResearchAtOSRAM/qprobing
The qprobing package provides functionality for evaluating the effectiveness of quantitative probing as a method for validating causal models. Developed by Daniel Grünbaum (@dg46).
  • ==1.0.19 requirements.txt

Size: 4.65 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

rail-cwru/ifs
  • ==1.0.18 interactivefs/requirements.txt

Size: 14 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

JordanWalker28/Data-Mining-and-Machine-Learning
A three part coursework that used various Data Mining Techniques to classify the facial recognition dataset.
  • ==1.0.18 data_mining_cw1-master 3/requirements.txt
  • ==1.0.18 data_mining_cw2-master/requirements.txt
  • ==1.0.18 data_mining_cw3-master 2/requirements.txt

Size: 18.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

sa2c/CellProfiler-RunOnCluster
A CellProfiler plugin for running on an HPC cluster
  • ==1.0.18 requirements.txt

Size: 397 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

HMS-IDAC/PCA
https://hms-idac.github.io/PCA/
  • ==1.0.19 code/UnMICST-P/requirements.txt

Size: 216 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

SamFangshan/EnsembleSSLProject
  • ==1.0.18 requirements.txt

Size: 83 KB - Last synced: 7 months ago - Pushed: almost 2 years ago

jni/cellom2tif
Python command line interface to convert Cellomics .C01 files to TIFF.
  • >=1.0.0 requirements.txt

Size: 20 MB - Last synced: 2 months ago - Pushed: about 5 years ago

HelikarLab/candis
:ribbon: A data mining suite for gene expression data.
  • ==1.0.14 requirements/production.txt
  • ==1.0.14 requirements-dev.txt
  • ==1.0.14 requirements.txt

Size: 35.7 MB - Last synced: 30 days ago - Pushed: over 1 year ago

matheuscas/pyfuzzy_toolbox
This project aims to provide matlab fuzzy toolbox functionalities in python
  • ==1.0.9 requirements.txt

Size: 39.2 MB - Last synced: 10 months ago - Pushed: over 7 years ago

bd2kccd/py-causal
  • >=1.0.11 setup.py

Size: 52.2 MB - Last synced: about 2 months ago - Pushed: about 1 year ago

MaximLippeveld/DeepClustering
Codebase for developing and testing deep clustering methods, specifically for imaging flow cytometry data.
  • ==1.0.18 requirements.txt

Size: 336 KB - Last synced: 4 months ago - Pushed: over 1 year ago

CalinaUK/MachineLearning-WEKA-EmotionRecognition
This was a research-focused project on the fundamentals of Machine Learning. The data set was used to classify the emotion of an image. The coursework was fully automated using Python. Algorithms included: Nearest Neighbour, Naïve Bayes, Bayesian Network, Decision Tree and Neural Networks. It covered key topics such as classification accuracy, preprocessing, clustering, overfitting and attribute selection.
  • ==1.0.18 requirements.txt

Size: 1.68 MB - Last synced: 12 months ago - Pushed: almost 2 years ago

bioimage-analysis/Chloe_Chromosome_detection
  • ==1.0.17 requirements.txt

Size: 23.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

TeamMacLean/fluorseg
segment and quantify in fluorescent images
  • * setup.py

Size: 34.2 KB - Last synced: about 1 month ago - Pushed: almost 4 years ago

JaneliaSciComp/ImagingEcosystem
The Imaging Ecosystem (well, parts of it, anyway).
  • ==1.0.18 bin/requirements.txt

Size: 25.8 MB - Last synced: about 1 month ago - Pushed: 8 months ago

saeyslab/cifconvert
cifconvert is a package built on the python-bioformats package that saves images and masks from the proprietary Amnis CIF-file format to an HDF5 file.
  • ==1.0.18 requirements.txt
  • ==1.0.18 setup.py

Size: 23.4 KB - Last synced: 11 days ago - Pushed: 11 days ago

N.Yin/rpi-d3m-part2
  • ==1.0.19 rpi_d3m_primitives_part2.egg-info/requires.txt
  • ==1.0.19 setup.py

Last synced: 2 days ago

PrinceS17/Crypcy
Crypto Currency Value Maker: A cypoto currency analysis website built with django.
  • ==1.0.18 requirements.txt

Size: 21.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

jhnnsrs/aisuite2
An updated implementation of the AISuite
  • ==1.0.18 requirements.txt

Size: 30.4 MB - Last synced: 13 days ago - Pushed: 7 months ago

TissueMAPS/TmLibrary 📦
Please use the https://github.com/TissueMAPS/TissueMAPS instead.
  • ==1.0.14 requirements.txt

Size: 88.2 MB - Last synced: 27 days ago - Pushed: over 5 years ago

TissueMAPS/TissueMAPS
Main TissueMAPS repository that bundles different repositories.
  • ==1.0.14 requirements.txt

Size: 214 MB - Last synced: 27 days ago - Pushed: over 1 year ago

jni/lesion
Quantify recovery of spinal cord lesions in zebrafish embryos
  • >=1.0.0 requirements.txt

Size: 332 KB - Last synced: about 1 year ago - Pushed: over 9 years ago

identinetics/saml_schematron
SAML metadata validation using standard XSD and additional schematron rules
  • * setup.py

Size: 596 KB - Last synced: 11 days ago - Pushed: over 5 years ago

DeepikaPomendkar/DjangoRestFramework
  • ==1.0.18 djongo1/requirements.txt

Size: 612 KB - Last synced: 30 days ago - Pushed: over 1 year ago

Manolomon/tera-j48
J48 Classifier trained with Tera-PROMISE dataset
  • ==1.0.18.post17 requirements.txt

Size: 13.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

Chloe-Girard/Foci_counting
  • ==1.0.17 requirements.txt

Size: 16.2 MB - Last synced: 12 months ago - Pushed: over 1 year ago

bioimage-analysis/Haodi_sarcomere
  • ==1.0.17 requirements.txt

Size: 5.12 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

renerichter/micropy
  • * setup.py

Size: 414 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

sanderslab/magellanmapper
MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification
  • ==1.0.19.post9 envs/requirements.txt

Size: 8.13 MB - Last synced: 8 days ago - Pushed: 8 days ago

IeAT-ASPIDE/Event-Detection-Engine
Event Detection Engine (EDE) for the H2020 ASPIDE Project.
  • ==1.0.19 requirements.txt

Size: 89.3 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

Nicholas-Schaub/polus-czi-extract-plugin
  • ==1.0.18 src/requirements.txt

Size: 6.84 KB - Last synced: 29 days ago - Pushed: almost 2 years ago

DIPET-UVT/EDE-Dipet
Event Detection Engine for the DIPET Chist-Era project
  • ==1.0.19 requirements.txt

Size: 10 MB - Last synced: 9 months ago - Pushed: about 1 year ago

uw-loci/multiscale
Modules for multiscale imaging at LOCI
  • * requirements.txt

Size: 6.19 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

fracpete/python-weka-wrapper 📦
Python 2.7 wrapper for Weka using javabridge.
  • >=1.0.14 setup.py

Size: 87.7 MB - Last synced: 3 days ago - Pushed: over 4 years ago

er432/TASSELpy
A Python API for the Java Program TASSEL
  • * requirements.txt

Size: 28.4 MB - Last synced: 27 days ago - Pushed: over 9 years ago

Ajg2/ml_cw1
  • ==1.0.18 requirements.txt

Size: 1.33 GB - Last synced: over 1 year ago

whaleni1/cellprofiler
  • ==1.0.17 Pipfile
  • ==1.0.17 Pipfile.lock
  • ==1.0.18 requirements.txt
  • * setup.py
  • * unpinned_requirements.txt

Size: 98.1 MB - Last synced: over 1 year ago

ungersebastian/image-processing
enter stuff here
  • * requirements.in

Last synced: over 1 year ago

nxwi/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.33 GB - Last synced: 7 months ago - Pushed: over 1 year ago

pelkmanslab/TissueMAPS
  • ==1.0.14 requirements.txt

Last synced: over 1 year ago

Arnie97/import-java
Import Java packages into Python - Syntax sugar for PyJNIus or JavaBridge
  • * setup.py

Size: 8.79 KB - Last synced: 14 days ago - Pushed: about 6 years ago

thefabus/zebrafishframework
  • ==1.0.17 requirements.txt

Last synced: over 1 year ago

norton-chris/Cell-Segmentation
This repository has development code for my Cell Segmentation project for the Han BME lab at Michigan Tech. Read the readme for more information.
  • ==1.0.19 new_requirements.txt

Size: 1.42 GB - Last synced: 6 months ago - Pushed: 6 months ago

illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.47 GB - Last synced: 10 days ago - Pushed: 10 days ago

bu-icsg/Hardware_Performance_Counters_Can_Detect_Malware_Myth_or_Fact
Code and Data for AisaCCS 2018 paper: Hardware Performance Counters Can Detect Malware: Myth or Fact?
  • ==1.0.14 data_analysis/pip_requirements.txt

Size: 217 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

usmanmuhd/candis Fork of HelikarLab/candis
:ribbon: A data mining suite for DNA microarrays.
  • ==1.0.14 requirements.txt

Size: 35.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

bthoughton/polus-plugins Fork of PolusAI/polus-plugins
  • ==1.0.18 transforms/images/polus-binary-operations-plugin/src/requirements.txt

Size: 162 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

yoda-vid/python-bioformats Fork of CellProfiler/python-bioformats
Read and write life sciences file formats
  • * setup.py

Size: 169 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

nishaq503/image-tools Fork of PolusAI/image-tools
  • ==1.0.18 transforms/images/polus-binary-operations-plugin/src/requirements.txt

Size: 62.8 MB - Last synced: 4 days ago - Pushed: 4 days ago

hamshkhawar/image-tools Fork of PolusAI/image-tools
  • ==1.0.18 transforms/images/polus-binary-operations-plugin/src/requirements.txt

Size: 64.1 MB - Last synced: 14 days ago - Pushed: 14 days ago

camilovelezr/image-tools Fork of PolusAI/image-tools
  • ==1.0.18 transforms/images/polus-binary-operations-plugin/src/requirements.txt

Size: 63.1 MB - Last synced: 7 days ago - Pushed: 7 days ago

dice-project/DICE-Anomaly-Detection-Tool
DICE Anomaly detection tool
  • ==1.0.14 requirement.txt

Size: 241 KB - Last synced: about 2 months ago - Pushed: over 6 years ago

italoarruda/python-weka-wrapper Fork of fracpete/python-weka-wrapper
Python wrapper for Weka using javabridge.
  • >=1.0.11 setup.py

Size: 26.7 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

gabicavalcante/noidea 📦
  • ==1.0.15 requirements.txt

Size: 14.1 MB - Last synced: 9 months ago - Pushed: over 6 years ago

trygvebw/Mecha
Tree-based machine learning models in Python
  • * requirements.txt

Size: 16.6 KB - Last synced: 9 months ago - Pushed: over 6 years ago

adamcatto/NICHD_NuMom2b_Data_Challenge
Team Leader: Ansaf Salleb-Aouissi
  • =1.0.18=pypi_0 requirements.txt

Size: 9.11 MB - Last synced: 9 months ago - Pushed: over 2 years ago

Shraddha2702/MultiClass-and-MultiLabel-using-SVM-and-KMeans
Multi-Class and Multi-Label Classification
  • ==1.0.18 requirements.txt

Size: 1.29 MB - Last synced: 9 months ago - Pushed: over 5 years ago

labsyspharm/UnMICST-info
  • ==1.0.19 code/UnMICST-P/requirements.txt

Size: 26.2 MB - Last synced: 12 months ago - Pushed: about 2 years ago

fracpete/python-weka-wrapper
Python wrapper for Weka using javabridge.
  • >=1.0.14 setup.py

Last synced: over 1 year ago

jakirkham/python-bioformats Fork of CellProfiler/python-bioformats
Read and write life sciences file formats
  • >=1.0 setup.py

Size: 23.1 MB - Last synced: 29 days ago - Pushed: over 8 years ago

Srikesh89/RayTrace-IoT-DnR
Program to Discover and Register IoT devices on a network
  • ==1.0.18 environment.yml

Size: 6.64 MB - Last synced: about 1 year ago - Pushed: about 5 years ago

HuyTu7/DebtFree
  • ==1.0.19 requirements.txt

Size: 1.33 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

whaleforever/carilogo
simple CBIR
  • ==1.0.11 requirements.txt

Size: 41 KB - Last synced: about 1 year ago - Pushed: about 8 years ago

bioimage-analysis/julia_clusters
  • ==1.0.17 requirements.txt

Size: 4.17 MB - Last synced: about 1 year ago - Pushed: about 5 years ago

AnneCarpenter/python-imagej
  • * setup.py

Size: 406 KB - Last synced: about 1 year ago - Pushed: over 8 years ago

ntchambers/illacceptanything
The project where literally anything* goes
  • * requirements.txt

Last synced: over 1 year ago

rahlk/Bellwether
Simpler Transfer Learning (Using "Bellwethers"). ARXIV link: https://arxiv.org/abs/1703.06218
  • * effort/requirements.txt
  • * effort/tests/requirements.txt
  • * issueCloseTime/requirements.txt
  • * issueCloseTime/tests/requirements.txt

Size: 21.5 MB - Last synced: 7 months ago - Pushed: about 7 years ago