Ecosyste.ms: Repos
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Package Usage: pypi: javabridge
Python wrapper for the Java Native Interface
33 versions
Latest release: almost 4 years ago
4 dependent packages
1,706 downloads last month
View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/javabridge
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/CellProfiler%2Fpython-javabridge
Dependent Repos 69
sudarsun/tomboost
A topic modeling based boosting approach to class imbalance learning- ==1.0.18 requirements.txt
Size: 1.39 MB - Last synced: 10 months ago - Pushed: over 1 year ago
GulzarAhmedButt/Python-Weka-Project
- ==1.0.18 requirements.txt
Size: 9.65 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
jakob-tu/zebrafishframework
- ==1.0.17 requirements.txt
Size: 1.83 MB - Last synced: 12 months ago - Pushed: over 1 year ago
aronsar/ganabi
- ==1.0.18 TwoStageTransfer/requirements.txt
Size: 395 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
QBI-Microscopy/BatchCrop
An application for batch cropping of serial sections from the slide scanner- ==1.0.18 requirements_mac.txt
Size: 5.81 MB - Last synced: about 2 months ago - Pushed: 3 months ago
mahsa-sa/pyfish
- ==1.0.17 requirements.txt
Size: 1.84 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
PolusAI/image-tools
- ==1.0.18 transforms/images/polus-binary-operations-plugin/src/requirements.txt
Size: 62.6 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
madebypixel02/Machine-Learning-Pacman
[Uc3m] The Classic ghost-eating game- ==1.0.16 requirements.txt
Size: 16.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
amcrabtree/tumor-finder
A framework for training ML models for tumor recognition on H&E WSIs- ==1.0.16 env/environment.yml
Size: 509 KB - Last synced: 7 months ago - Pushed: over 1 year ago
chunglabmit/leica2tif
A quick command-line tool to convert Leica files to TIF.- * environment.yaml
- * setup.py
Size: 10.7 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
cudmore/bImPy
A multi-dimensional image viewer and annotation tool- * requirements-bioformats.txt
- * setup.py
Size: 135 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
frankligy/SNAF
Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing data, it further leverages both deep learning and hierarchical Bayesian models to prioritize certain candidates for experimental validation- ==1.0.14 AltAnalyze/requirements_all.txt
Size: 86.6 MB - Last synced: 1 day ago - Pushed: about 1 month ago
wangqianwen0418/DiscriLens
- ==1.0.18 py/requirements.txt
Size: 98.2 MB - Last synced: 24 days ago - Pushed: about 1 year ago
corvideon/aitiaexplorer
Causal discovery and causal inference tool.- ==1.0.19 requirements.txt
Size: 54.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
aparnasherlekar/aparnasb
- ==1.0.17 requirements.txt
Size: 5.12 MB - Last synced: 12 months ago - Pushed: over 1 year ago
Vishakha6/UNet-Python
- ==1.0.19 requirements.txt
Size: 24.4 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
chuck-sys/genset-demo-site 📦
The website for demonstrating (and explaining) the GenSET project.- ==1.0.14 requirements.txt
Size: 116 KB - Last synced: 6 months ago - Pushed: about 3 years ago
MLResearchAtOSRAM/qprobing
The qprobing package provides functionality for evaluating the effectiveness of quantitative probing as a method for validating causal models. Developed by Daniel Grünbaum (@dg46).- ==1.0.19 requirements.txt
Size: 4.65 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
rail-cwru/ifs
- ==1.0.18 interactivefs/requirements.txt
Size: 14 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
JordanWalker28/Data-Mining-and-Machine-Learning
A three part coursework that used various Data Mining Techniques to classify the facial recognition dataset.- ==1.0.18 data_mining_cw1-master 3/requirements.txt
- ==1.0.18 data_mining_cw2-master/requirements.txt
- ==1.0.18 data_mining_cw3-master 2/requirements.txt
Size: 18.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
sa2c/CellProfiler-RunOnCluster
A CellProfiler plugin for running on an HPC cluster- ==1.0.18 requirements.txt
Size: 397 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
HMS-IDAC/PCA
https://hms-idac.github.io/PCA/- ==1.0.19 code/UnMICST-P/requirements.txt
Size: 216 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago
SamFangshan/EnsembleSSLProject
- ==1.0.18 requirements.txt
Size: 83 KB - Last synced: 7 months ago - Pushed: almost 2 years ago
jni/cellom2tif
Python command line interface to convert Cellomics .C01 files to TIFF.- >=1.0.0 requirements.txt
Size: 20 MB - Last synced: 2 months ago - Pushed: about 5 years ago
HelikarLab/candis
:ribbon: A data mining suite for gene expression data.- ==1.0.14 requirements/production.txt
- ==1.0.14 requirements-dev.txt
- ==1.0.14 requirements.txt
Size: 35.7 MB - Last synced: 30 days ago - Pushed: over 1 year ago
matheuscas/pyfuzzy_toolbox
This project aims to provide matlab fuzzy toolbox functionalities in python- ==1.0.9 requirements.txt
Size: 39.2 MB - Last synced: 10 months ago - Pushed: over 7 years ago
bd2kccd/py-causal
- >=1.0.11 setup.py
Size: 52.2 MB - Last synced: about 2 months ago - Pushed: about 1 year ago
MaximLippeveld/DeepClustering
Codebase for developing and testing deep clustering methods, specifically for imaging flow cytometry data.- ==1.0.18 requirements.txt
Size: 336 KB - Last synced: 4 months ago - Pushed: over 1 year ago
CalinaUK/MachineLearning-WEKA-EmotionRecognition
This was a research-focused project on the fundamentals of Machine Learning. The data set was used to classify the emotion of an image. The coursework was fully automated using Python. Algorithms included: Nearest Neighbour, Naïve Bayes, Bayesian Network, Decision Tree and Neural Networks. It covered key topics such as classification accuracy, preprocessing, clustering, overfitting and attribute selection.- ==1.0.18 requirements.txt
Size: 1.68 MB - Last synced: 12 months ago - Pushed: almost 2 years ago
bioimage-analysis/Chloe_Chromosome_detection
- ==1.0.17 requirements.txt
Size: 23.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
TeamMacLean/fluorseg
segment and quantify in fluorescent images- * setup.py
Size: 34.2 KB - Last synced: about 1 month ago - Pushed: almost 4 years ago
JaneliaSciComp/ImagingEcosystem
The Imaging Ecosystem (well, parts of it, anyway).- ==1.0.18 bin/requirements.txt
Size: 25.8 MB - Last synced: about 1 month ago - Pushed: 8 months ago
saeyslab/cifconvert
cifconvert is a package built on the python-bioformats package that saves images and masks from the proprietary Amnis CIF-file format to an HDF5 file.- ==1.0.18 requirements.txt
- ==1.0.18 setup.py
Size: 23.4 KB - Last synced: 11 days ago - Pushed: 11 days ago
N.Yin/rpi-d3m-part2
- ==1.0.19 rpi_d3m_primitives_part2.egg-info/requires.txt
- ==1.0.19 setup.py
Last synced: 2 days ago
PrinceS17/Crypcy
Crypto Currency Value Maker: A cypoto currency analysis website built with django.- ==1.0.18 requirements.txt
Size: 21.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
jhnnsrs/aisuite2
An updated implementation of the AISuite- ==1.0.18 requirements.txt
Size: 30.4 MB - Last synced: 13 days ago - Pushed: 7 months ago
TissueMAPS/TmLibrary 📦
Please use the https://github.com/TissueMAPS/TissueMAPS instead.- ==1.0.14 requirements.txt
Size: 88.2 MB - Last synced: 27 days ago - Pushed: over 5 years ago
TissueMAPS/TissueMAPS
Main TissueMAPS repository that bundles different repositories.- ==1.0.14 requirements.txt
Size: 214 MB - Last synced: 27 days ago - Pushed: over 1 year ago
jni/lesion
Quantify recovery of spinal cord lesions in zebrafish embryos- >=1.0.0 requirements.txt
Size: 332 KB - Last synced: about 1 year ago - Pushed: over 9 years ago
identinetics/saml_schematron
SAML metadata validation using standard XSD and additional schematron rules- * setup.py
Size: 596 KB - Last synced: 11 days ago - Pushed: over 5 years ago
DeepikaPomendkar/DjangoRestFramework
- ==1.0.18 djongo1/requirements.txt
Size: 612 KB - Last synced: 30 days ago - Pushed: over 1 year ago
Manolomon/tera-j48
J48 Classifier trained with Tera-PROMISE dataset- ==1.0.18.post17 requirements.txt
Size: 13.7 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
Chloe-Girard/Foci_counting
- ==1.0.17 requirements.txt
Size: 16.2 MB - Last synced: 12 months ago - Pushed: over 1 year ago
bioimage-analysis/Haodi_sarcomere
- ==1.0.17 requirements.txt
Size: 5.12 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
renerichter/micropy
- * setup.py
Size: 414 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
sanderslab/magellanmapper
MagellanMapper is a graphical interface for 3D bioimage annotation, atlas registration, and regional quantification- ==1.0.19.post9 envs/requirements.txt
Size: 8.13 MB - Last synced: 8 days ago - Pushed: 8 days ago
IeAT-ASPIDE/Event-Detection-Engine
Event Detection Engine (EDE) for the H2020 ASPIDE Project.- ==1.0.19 requirements.txt
Size: 89.3 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
Nicholas-Schaub/polus-czi-extract-plugin
- ==1.0.18 src/requirements.txt
Size: 6.84 KB - Last synced: 29 days ago - Pushed: almost 2 years ago
DIPET-UVT/EDE-Dipet
Event Detection Engine for the DIPET Chist-Era project- ==1.0.19 requirements.txt
Size: 10 MB - Last synced: 9 months ago - Pushed: about 1 year ago
uw-loci/multiscale
Modules for multiscale imaging at LOCI- * requirements.txt
Size: 6.19 MB - Last synced: about 1 month ago - Pushed: over 1 year ago
fracpete/python-weka-wrapper 📦
Python 2.7 wrapper for Weka using javabridge.- >=1.0.14 setup.py
Size: 87.7 MB - Last synced: 3 days ago - Pushed: over 4 years ago
er432/TASSELpy
A Python API for the Java Program TASSEL- * requirements.txt
Size: 28.4 MB - Last synced: 27 days ago - Pushed: over 9 years ago
whaleni1/cellprofiler
- ==1.0.17 Pipfile
- ==1.0.17 Pipfile.lock
- ==1.0.18 requirements.txt
- * setup.py
- * unpinned_requirements.txt
Size: 98.1 MB - Last synced: over 1 year ago
nxwi/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.- * data/requirements.txt
Size: 1.33 GB - Last synced: 7 months ago - Pushed: over 1 year ago
Arnie97/import-java
Import Java packages into Python - Syntax sugar for PyJNIus or JavaBridge- * setup.py
Size: 8.79 KB - Last synced: 14 days ago - Pushed: about 6 years ago
norton-chris/Cell-Segmentation
This repository has development code for my Cell Segmentation project for the Han BME lab at Michigan Tech. Read the readme for more information.- ==1.0.19 new_requirements.txt
Size: 1.42 GB - Last synced: 6 months ago - Pushed: 6 months ago
illacceptanything/illacceptanything
The project where literally anything* goes.- * data/requirements.txt
Size: 1.47 GB - Last synced: 10 days ago - Pushed: 10 days ago
bu-icsg/Hardware_Performance_Counters_Can_Detect_Malware_Myth_or_Fact
Code and Data for AisaCCS 2018 paper: Hardware Performance Counters Can Detect Malware: Myth or Fact?- ==1.0.14 data_analysis/pip_requirements.txt
Size: 217 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
usmanmuhd/candis Fork of HelikarLab/candis
:ribbon: A data mining suite for DNA microarrays.- ==1.0.14 requirements.txt
Size: 35.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
bthoughton/polus-plugins Fork of PolusAI/polus-plugins
- ==1.0.18 transforms/images/polus-binary-operations-plugin/src/requirements.txt
Size: 162 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
yoda-vid/python-bioformats Fork of CellProfiler/python-bioformats
Read and write life sciences file formats- * setup.py
Size: 169 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
nishaq503/image-tools Fork of PolusAI/image-tools
- ==1.0.18 transforms/images/polus-binary-operations-plugin/src/requirements.txt
Size: 62.8 MB - Last synced: 4 days ago - Pushed: 4 days ago
hamshkhawar/image-tools Fork of PolusAI/image-tools
- ==1.0.18 transforms/images/polus-binary-operations-plugin/src/requirements.txt
Size: 64.1 MB - Last synced: 14 days ago - Pushed: 14 days ago
camilovelezr/image-tools Fork of PolusAI/image-tools
- ==1.0.18 transforms/images/polus-binary-operations-plugin/src/requirements.txt
Size: 63.1 MB - Last synced: 7 days ago - Pushed: 7 days ago
dice-project/DICE-Anomaly-Detection-Tool
DICE Anomaly detection tool- ==1.0.14 requirement.txt
Size: 241 KB - Last synced: about 2 months ago - Pushed: over 6 years ago
italoarruda/python-weka-wrapper Fork of fracpete/python-weka-wrapper
Python wrapper for Weka using javabridge.- >=1.0.11 setup.py
Size: 26.7 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago
gabicavalcante/noidea 📦
- ==1.0.15 requirements.txt
Size: 14.1 MB - Last synced: 9 months ago - Pushed: over 6 years ago
trygvebw/Mecha
Tree-based machine learning models in Python- * requirements.txt
Size: 16.6 KB - Last synced: 9 months ago - Pushed: over 6 years ago
adamcatto/NICHD_NuMom2b_Data_Challenge
Team Leader: Ansaf Salleb-Aouissi- =1.0.18=pypi_0 requirements.txt
Size: 9.11 MB - Last synced: 9 months ago - Pushed: over 2 years ago
Shraddha2702/MultiClass-and-MultiLabel-using-SVM-and-KMeans
Multi-Class and Multi-Label Classification- ==1.0.18 requirements.txt
Size: 1.29 MB - Last synced: 9 months ago - Pushed: over 5 years ago
labsyspharm/UnMICST-info
- ==1.0.19 code/UnMICST-P/requirements.txt
Size: 26.2 MB - Last synced: 12 months ago - Pushed: about 2 years ago
fracpete/python-weka-wrapper
Python wrapper for Weka using javabridge.- >=1.0.14 setup.py
Last synced: over 1 year ago
jakirkham/python-bioformats Fork of CellProfiler/python-bioformats
Read and write life sciences file formats- >=1.0 setup.py
Size: 23.1 MB - Last synced: 29 days ago - Pushed: over 8 years ago
Srikesh89/RayTrace-IoT-DnR
Program to Discover and Register IoT devices on a network- ==1.0.18 environment.yml
Size: 6.64 MB - Last synced: about 1 year ago - Pushed: about 5 years ago
HuyTu7/DebtFree
- ==1.0.19 requirements.txt
Size: 1.33 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
whaleforever/carilogo
simple CBIR- ==1.0.11 requirements.txt
Size: 41 KB - Last synced: about 1 year ago - Pushed: about 8 years ago
bioimage-analysis/julia_clusters
- ==1.0.17 requirements.txt
Size: 4.17 MB - Last synced: about 1 year ago - Pushed: about 5 years ago
AnneCarpenter/python-imagej
- * setup.py
Size: 406 KB - Last synced: about 1 year ago - Pushed: over 8 years ago
ntchambers/illacceptanything
The project where literally anything* goes- * requirements.txt
Last synced: over 1 year ago
rahlk/Bellwether
Simpler Transfer Learning (Using "Bellwethers"). ARXIV link: https://arxiv.org/abs/1703.06218- * effort/requirements.txt
- * effort/tests/requirements.txt
- * issueCloseTime/requirements.txt
- * issueCloseTime/tests/requirements.txt
Size: 21.5 MB - Last synced: 7 months ago - Pushed: about 7 years ago