Ecosyste.ms: Repos
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GitHub / TissueMAPS / TissueMAPS
Main TissueMAPS repository that bundles different repositories.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TissueMAPS%2FTissueMAPS
Stars: 7
Forks: 18
Open Issues: 124
License: None
Language: TypeScript
Repo Size: 214 MB
Dependencies:
455
Created: over 7 years ago
Updated: 8 months ago
Last pushed: over 1 year ago
Last synced: about 1 month ago
Topics: docker-compose, documentation, integration-testing, pytest, restructured-text, sphinx, submodules
Files
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Readme
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Dependencies
- tissuemaps-app latest
- tissuemaps-db_master latest
- tissuemaps-db_worker latest
- tissuemaps-web latest
tmui/src/bower.json
bower
- angular-mocks ~1.3.15 development
- EaselJS easeljs#~0.8.2
- angular ~1.5.3
- angular-animate ~1.5.5
- angular-bootstrap ^1.3.3
- angular-highlightjs ~0.6.1
- angular-hotkeys chieffancypants/angular-hotkeys#~1.6.0
- angular-loading-bar ~0.9.0
- angular-marked ~1.2.0
- angular-plotly ~0.1.3
- angular-route ~1.3.15
- angular-sanitize ~1.3.15
- angular-smart-table ~2.1.8
- angular-ui-bootstrap-bower ~1.3.3
- angular-ui-router ~0.2.13
- angular-ui-router-breadcrumbs ~0.0.2
- angular-ui-scroll ~1.5.1
- angular-ui-slider ~0.4.0
- angular-ui-sortable ~0.13.3
- angular-xeditable ~0.1.12
- checklist-model ~0.9.0
- fontawesome ~4.6.3
- highlightjs ~9.3.0
- jquery ~3.1.0
- js-yaml ~3.6.1
- marked ~0.3.5
- momentjs ~2.10.2
- ng-file-upload ~12.0.4
- ng-websocket ~0.2.1
- ngDraggable ngdraggable#~0.1.8
- ngInfiniteScroll 1.0.0
- perfect-scrollbar ^0.6.11
- plotlyjs plotly#~1.4.1
- underscore ~1.8.3
- R >= 3.1.2 depends
- R >= 3.1.2 depends
- R >= 3.2.3 depends
- clean-css 2.2.16 development
- coveralls 2.11.2 development
- debounce ^1.0.0 development
- expect.js 0.3.1 development
- gaze ^0.5.1 development
- istanbul 0.3.13 development
- jquery 2.1.1 development
- jshint 2.5.6 development
- mocha 1.21.5 development
- mocha-phantomjs 3.5.1 development
- mustache 2.1.3 development
- phantomjs 1.9.10 development
- proj4 2.3.6 development
- resemblejs 1.2.0 development
- sinon 1.10.3 development
- slimerjs-edge 0.10.0-pre-2 development
- wrench 1.5.8 development
- async 0.9.0
- browserify 9.0.3
- closure-util 1.6.1
- earcut ^1.4.2
- fs-extra 0.12.0
- glob 5.0.3
- graceful-fs 3.0.2
- handlebars 3.0.1
- jsdoc 3.3.2
- marked 0.3.5
- metalsmith 1.6.0
- metalsmith-templates 0.7.0
- nomnom 1.8.0
- pixelworks 1.0.0
- rbush 1.3.5
- temp 0.8.1
- walk 2.3.4
- definition-tester 0.2.0 development
- typescript 1.6.2 development
- bower ^1.4.1 development
- del ^2.2.0 development
- es6-template-strings ^2.0.0 development
- gulp ^3.9.1 development
- gulp-banner ^0.1.3 development
- gulp-concat ^2.6.0 development
- gulp-connect ^2.3.1 development
- gulp-if ^2.0.0 development
- gulp-less ^3.0.5 development
- gulp-livereload ^3.8.1 development
- gulp-rename ^1.2.2 development
- gulp-rev ^7.0.0 development
- gulp-rev-replace ^0.4.3 development
- gulp-sourcemaps ^1.6.0 development
- gulp-typescript ^2.11.0 development
- gulp-uglify ^1.5.3 development
- gulp-watch ^4.3.5 development
- http-proxy-middleware ^0.10.0 development
- run-sequence ^1.1.5 development
- typescript ^1.6.2 development
- uglify-js 2.6.1 development
- yargs ^4.1.0 development
- numpydoc ==0.6.0
- sphinx-pyreverse ==0.0.12
- sphinxcontrib-autoprogram ==0.1.3
- sphinxcontrib-httpdomain ==1.5.0
- sphinxcontrib-matlabdomain ==0.2.7
- sphinxcontrib-sqlalchemyviz ==0.2
- cached-property >=1.3.0
- centrosome >=1.0.5
- colorlover >=0.2.1
- cython >=0.24
- mahotas >=1.4.0
- ndg-httpsclient >=0.4.0
- numpy >=1.12.0
- opencv-contrib-python >=3.2
- pandas >=0.19.2
- plotly >=2.0.0
- pyasn1 >=0.1.9
- pytest >=2.8.2
- scikit-image >=0.11.3
- scipy >=0.16.0
- sep >=1.0.0
- simpleitk >=1.0.0
- centrosome >=1.0.5
- cython >=0.24
- jtlibrary >=0.2.0
- mahotas >=1.4.0
- numpy >=1.10.1
- opencv-contrib-python >=3.2
- pytest >=2.8.2
- scikit-image >=0.11.3
- scipy >=0.16.0
requirements.txt
pypi
- APScheduler ==3.3.1
- Cython ==0.25.2
- FITS-tools ==0.0.dev282
- Flask ==0.12.1
- Flask-JWT ==0.3.2
- Flask-Migrate ==2.0.3
- Flask-Redis ==0.3.0
- Flask-SQLAlchemy ==2.2
- Flask-SQLAlchemy-Session ==1.1
- Flask-Script ==2.0.5
- Flask-uWSGI-WebSocket ==0.6.0
- GeoAlchemy2 ==0.4.0
- Jinja2 ==2.9.6
- Mako ==1.0.6
- MarkupSafe ==1.0
- Pillow ==4.1.0
- PyJWT ==1.4.2
- PyWavelets ==0.5.2
- PyYAML ==3.12
- SQLAlchemy ==1.1.9
- SQLAlchemy-Utils ==0.32.14
- Shapely ==1.5.17.post1
- Werkzeug ==0.12.1
- alembic ==0.9.1
- appdirs ==1.4.3
- asn1crypto ==0.22.0
- astropy ==1.3.2
- cached-property ==1.3.0
- centrosome ==1.0.7
- cffi ==1.10.0
- click ==6.7
- colorlover ==0.2.1
- cryptography ==1.8.1
- cycler ==0.10.0
- decorator ==4.0.11
- enum34 ==1.1.6
- funcsigs ==1.0.2
- functools32 ==3.2.3.post2
- future ==0.16.0
- futures ==3.1.1
- gc3pie-2.6.4 v2.6.4
- gevent ==1.2.1
- greenlet ==0.4.12
- h5py ==2.7.0
- idna ==2.5
- image-registration ==0.2.1
- ipaddress ==1.0.18
- ipython-genutils ==0.2.0
- itsdangerous ==0.24
- javabridge ==1.0.14
- jsonschema ==2.6.0
- jupyter-core ==4.3.0
- lxml ==3.7.3
- mahotas ==1.4.3
- matlab-wrapper ==0.9.8
- matplotlib ==2.0.0
- mock ==2.0.0
- natsort ==5.0.2
- nbformat ==4.3.0
- ndg-httpsclient ==0.4.2
- networkx ==1.11
- nose ==1.3.7
- numexpr ==2.6.2
- numpy ==1.12.1
- olefile ==0.44
- opencv-contrib-python ==3.2.0.7
- openslide-python ==1.1.1
- packaging ==16.8
- pandas ==0.19.2
- paramiko ==2.1.2
- parsedatetime ==2.3
- passlib ==1.7.1
- pbr ==3.0.0
- plotly ==2.0.7
- pluggy ==0.4.0
- prettytable ==0.7.2
- psycopg2 ==2.7.1
- py ==1.4.33
- pyOpenSSL ==17.0.0
- pyasn1 ==0.2.3
- pycparser ==2.17
- pyparsing ==2.2.0
- pypng ==0.0.18
- pytest ==3.0.7
- python-bioformats ==1.1.0
- python-dateutil ==2.6.0
- python-editor ==1.0.3
- pytz ==2017.2
- redis ==2.10.5
- requests ==2.13.0
- rpy2 ==2.8.5
- scikit-image ==0.13.0
- scikit-learn ==0.18.1
- scipy ==0.19.0
- sep ==1.0.0
- simplejson ==3.10.0
- singledispatch ==3.4.0.3
- six ==1.10.0
- subprocess32 ==3.2.7
- tables ==3.4.2
- tox ==2.7.0
- traitlets ==4.3.2
- tzlocal ==1.4
- whichcraft ==0.4.0
tmclient/setup.py
pypi
- PyYAML >=3.11
- matplotlib *
- opencv-contrib-python >=3.2
- pandas >=0.19.1
- prettytable >=0.7.2
- requests >=2.11.0
- scikit-image *
- seaborn *
- Babel ==2.5.0
- Jinja2 ==2.9.6
- MarkupSafe ==1.0
- PyNaCl ==1.1.2
- PyYAML ==3.12
- ansible >=2.5
- apache-libcloud ==2.1.0
- appdirs ==1.4.3
- asn1crypto ==0.22.0
- backports.ssl-match-hostname ==3.5.0.1
- bcrypt ==3.1.3
- boto3 ==1.4.6
- botocore ==1.6.8
- cached-property ==1.3.0
- cffi ==1.10.0
- cliff ==2.8.0
- cmd2 ==0.7.7
- cryptography ==2.0.3
- debtcollector ==1.17.0
- decorator ==4.1.2
- deprecation ==1.0.1
- docker-compose ==1.9.0
- docker-py ==1.10.6
- docker-pycreds ==0.2.1
- dockerpty ==0.4.1
- docopt ==0.6.2
- docutils ==0.14
- dogpile.cache ==0.6.4
- elasticluster-1.3.dev20 v1.3.dev20
- enum34 ==1.1.6
- funcsigs ==1.0.2
- functools32 ==3.2.3.post2
- futures ==3.1.1
- idna ==2.6
- ipaddress ==1.0.18
- iso8601 ==0.1.12
- jmespath ==0.9.3
- jsonpatch ==1.16
- jsonpointer ==1.10
- jsonschema ==2.6.0
- keystoneauth1 ==3.1.0
- monotonic ==1.3
- msgpack-python ==0.4.8
- munch ==2.2.0
- netaddr ==0.7.19
- netifaces ==0.10.6
- openstacksdk ==0.9.17
- os-client-config ==1.28.0
- osc-lib ==1.7.0
- oslo.config ==4.11.0
- oslo.i18n ==3.17.0
- oslo.serialization ==2.20.0
- oslo.utils ==3.28.0
- paramiko ==2.2.3
- pbr ==3.1.1
- positional ==1.2.1
- prettytable ==0.7.2
- psycopg2 ==2.7.3.1
- pyOpenSSL ==17.2.0
- pyasn1 ==0.3.3
- pycparser ==2.18
- pycrypto ==2.6.1
- pyparsing ==2.2.0
- pyperclip ==1.5.27
- python-cinderclient ==3.1.0
- python-dateutil ==2.6.1
- python-glanceclient ==2.8.0
- python-ironicclient ==1.16.0
- python-keystoneclient ==3.13.0
- python-novaclient ==9.1.0
- python-openstackclient ==3.12.0
- pytz ==2017.2
- requests ==2.11.1
- requestsexceptions ==1.3.0
- rfc3986 ==1.1.0
- s3transfer ==0.1.10
- shade ==1.22.2
- simplejson ==3.11.1
- six ==1.10.0
- stevedore ==1.25.0
- texttable ==0.8.8
- tmdeploy *
- unicodecsv ==0.14.1
- warlock ==1.2.0
- websocket-client ==0.44.0
- whichcraft ==0.4.1
- wrapt ==1.10.11
tmdeploy/setup.py
pypi
- PyYAML >=3.11
- ansible >=2.7
- apache-libcloud >=1.3.0
- boto >=2.48
- boto3 >=1.4.1
- elasticluster >=1.3.dev20
- psycopg2 >=2.6.1
- pycrypto >=2.6.1
- python-novaclient >=6.0.2
- shade >=1.12.1
- whichcraft >=0.4.0
tmlibrary/setup.py
pypi
- Cython >=0.22.1
- FITS-tools *
- It *
- PyYAML >=3.11
- Python-bioformats *
- Some *
- Ubuntu *
- cached-property >=1.3.0
- decorator >=3.4.2
- gc3pie >=2.5.2
- geoalchemy2 >=0.3.0
- h5py >=2.5.0
- image-registration ==0.2.1
- jtlibrary >=0.3.2
- lxml *
- mahotas >=1.4.1
- matplotlib >=2.0.0
- mock >=1.0.1
- natsort >=4.0.3
- nose >=1.3.7
- numpy >=1.12.0
- opencv-contrib-python >=3.2
- openslide-python >=1.1.0
- pandas >=0.19.2
- paramiko >=1.15.3
- parsedatetime >=1.5
- passlib >=1.6.5
- prettytable >=0.7.2
- psycopg2 >=2.7
- pyparsing >=2.0.3
- pypng >=0.0.17
- pytest >=3.0.7
- python-bioformats >=1.0.9
- python-dateutil >=2.4.2
- pytz >=2015.7
- scikit-image >=0.12.0
- scikit-learn >=0.18
- scipy >=0.16.0
- shapely >=1.5.15
- simplejson >=3.10
- sqlalchemy >=1.1.5
- sqlalchemy-utils >=0.32.9
- sudo *
- tables >=3.2.2
- whichcraft >=0.4.0
tmserver/setup.py
pypi
- Flask >=0.10.1
- Flask-JWT >=0.3.1
- Flask-Migrate >=1.6.0
- Flask-SQLAlchemy >=2.1
- Flask-Script >=2.0.5
- Flask-uWSGI-WebSocket >=0.5.2
- Jinja2 >=2.8
- Mako >=1.0.3
- MarkupSafe >=0.23
- PyJWT >=1.4.0
- Werkzeug >=0.10.4
- alembic >=0.8.3
- apscheduler >=3.3.1
- flask-redis >=0.1.0
- flask-sqlalchemy-session >=1.1
- gc3pie >=2.5.2
- gevent >=1.1.1
- itsdangerous >=0.24
- pyparsing >=2.0.5
- python-dateutil >=2.4.2
- python-editor >=0.4
- tmlibrary >=0.1.0
- ubuntu xenial build
- JSONStream 0.8.4
- assertion-error 1.0.1
- balanced-match 0.2.0
- bluebird 1.2.4
- bluebird 2.10.0
- brace-expansion 1.1.0
- concat-map 0.0.1
- core-util-is 1.0.1
- definition-header 0.1.0
- definition-tester 0.2.0
- findup-sync 0.2.1
- git-wrapper 0.1.1
- glob 4.5.3
- glob 4.3.5
- hoek 2.16.2
- inflight 1.0.4
- inherits 2.0.1
- isarray 0.0.1
- isemail 1.2.0
- joi 4.9.0
- joi-assert 0.0.3
- jsonparse 0.0.5
- lazy.js 0.4.2
- manticore 0.2.4
- minimatch 2.0.10
- minimist 0.0.10
- moment 2.10.6
- once 1.3.2
- optimist 0.6.1
- parsimmon 0.5.1
- pjs 5.1.1
- readable-stream 1.0.33
- string_decoder 0.10.31
- through 2.3.8
- through2 0.5.1
- topo 1.0.3
- type-detect 0.1.2
- typescript 1.6.2
- wordwrap 0.0.3
- wrappy 1.0.1
- xregexp 2.0.0
- xtend 3.0.0