Ecosyste.ms: Repos

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Package Usage: pypi: pypairix

Pypairix is a Python module for fast querying on a pairix-indexed bgzipped text file that contains a pair of genomic coordinates per line. For more information, see: https://github.com/4dn-dcic/pairix/blob/master/README.md.
33 versions
Latest release: about 5 years ago
4 dependent packages
349 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/pypairix

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/4dn-dcic%2Fpairix

Dependent Repos 14

vizllnor/file1
  • ==0.3.7 requirements.txt

Size: 1.03 GB - Last synced: about 1 year ago - Pushed: almost 2 years ago

wangqianwen0418/DRAVA
  • ==0.3.7 server/requirements.txt

Size: 124 MB - Last synced: about 1 month ago - Pushed: about 1 year ago

ygidtu/trackplot
trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and full-length sequencing datasets.
  • ==0.3.7 Pipfile.lock

Size: 169 MB - Last synced: 1 day ago - Pushed: 2 days ago

koszullab/metaTOR
Metagenomic binning based on Hi-C data
  • * requirements.txt

Size: 127 MB - Last synced: 3 days ago - Pushed: 2 months ago

Khrameeva-Lab/contact-hunter 📦
  • >=0.3.7 setup.py

Size: 281 KB - Last synced: 10 months ago - Pushed: almost 2 years ago

parklab/HiNT
HiC for copy Number variation and Translocation detection
  • >=0.3.0 requirements.txt

Size: 6.06 MB - Last synced: 2 months ago - Pushed: almost 3 years ago

zhihou7/HOI-CL
Series of work (ECCV2020, CVPR2021, CVPR2021, ECCV2022) about Compositional Learning for Human-Object Interaction Exploration
  • ==0.3.7 requirements.txt

Size: 13.3 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

med-team/python-cooler
library for a sparse, compressed, binary persistent storage
  • * requirements.txt

Last synced: over 1 year ago

dozmorovlab/UO_project_2021
Shared repo for the UO project
  • ==0.3.7 02_visualize_replicates/PCA/requirements.txt

Size: 16.2 MB - Last synced: 8 months ago - Pushed: about 2 years ago

open2c/cooler
A cool place to store your Hi-C
  • * requirements.txt

Size: 88.1 MB - Last synced: 3 days ago - Pushed: 4 days ago

ay-lab/mustache
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
  • ==0.3.7 environment.yml

Size: 8.74 MB - Last synced: 25 days ago - Pushed: 26 days ago

shirondru/PCGC_Challenge
  • ==0.3.7 requirements.txt

Size: 68.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

nanoporetech/pore-c 📦
Pore-C support
  • ==0.3.7 requirements/dev.txt
  • ==0.3.7 requirements/docs.txt
  • ==0.3.7 requirements/testing.txt
  • ==0.3.7 requirements.txt

Size: 2.3 MB - Last synced: 22 days ago - Pushed: over 1 year ago

zhou-ran/sashimi.py Fork of ygidtu/trackplot
  • ==0.3.7 Pipfile.lock

Size: 169 MB - Last synced: 1 day ago - Pushed: 2 days ago

StephanHolgerD/primer4HUGbuild Fork of phiweger/primer4
Validating mutations without the pain
  • ==0.3.7 requirements.txt

Size: 3.05 MB - Last synced: 12 months ago - Pushed: about 1 year ago

vaquerizaslab/chess-2021
  • ==0.3.7 requirements.txt

Size: 24.8 MB - Last synced: 7 months ago - Pushed: 7 months ago

vaquerizaslab/Ing-Simmons_et_al_dorsoventral_3D_genome
  • ==0.3.7 requirements.txt

Size: 139 KB - Last synced: 7 months ago - Pushed: about 3 years ago

007gzs/test
  • * requirements.txt

Size: 1.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

hms-dbmi/3d-genome-processing-tutorial
A 3D genome data processing tutorial for ISMB/ECCB 2017
  • * environment.yml

Size: 188 MB - Last synced: about 2 months ago - Pushed: almost 7 years ago

dhall1995/GrapHiC
Python module to efficiently construct graph datasets from Hi-C and ChIPseq data
  • ==0.3.7 environment.yml

Size: 58.2 MB - Last synced: 29 days ago - Pushed: almost 3 years ago

battyone/cooler Fork of open2c/cooler
A cool place to store your Hi-C
  • * requirements.txt

Size: 87.9 MB - Last synced: about 2 months ago - Pushed: over 3 years ago

lulizou/cooler Fork of open2c/cooler
A cool place to store your Hi-C
  • * requirements.txt

Size: 86.8 MB - Last synced: 10 months ago - Pushed: almost 4 years ago

danledinh/cooler Fork of open2c/cooler
A cool place to store your Hi-C
  • * setup.py

Size: 49.2 MB - Last synced: about 2 months ago - Pushed: over 6 years ago

Kononkova/contact-hunter Fork of Khrameeva-Lab/contact-hunter
  • >=0.3.7 setup.py

Size: 281 KB - Last synced: 10 months ago - Pushed: almost 2 years ago

Kononkova/cooler Fork of open2c/cooler
A cool place to store your Hi-C
  • * requirements.txt

Size: 88 MB - Last synced: 10 months ago - Pushed: almost 2 years ago

zhang-jiankun/cooler Fork of open2c/cooler
A cool place to store your Hi-C
  • * requirements.txt

Size: 86.7 MB - Last synced: 9 months ago - Pushed: over 4 years ago

ritika-giri/genomic-data-visualization-tools
  • ==0.3.7 requirements.txt

Size: 14.1 MB - Last synced: 9 months ago - Pushed: over 1 year ago

taronling/performer-speedyspeech Fork of taronling-forks/speedyspeech
  • ==0.3.7 artemis_requirements.txt

Size: 66.5 MB - Last synced: 8 months ago - Pushed: 8 months ago

LMH0066/SEE
a Single-cell method for predicting Chromatin Conformation based on gene Expression
  • ==0.3.7 environment.yml

Size: 264 MB - Last synced: 22 days ago - Pushed: about 2 months ago

ay-lab-team/T1D-Loop-Catalog
  • * workflow/envs/environment.yml

Size: 45 MB - Last synced: 24 days ago - Pushed: 24 days ago

ERSchultz/GNN_HiC_to_Structure
  • ==0.3.7 environment.yml

Size: 490 KB - Last synced: 8 days ago - Pushed: 9 days ago