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Package Usage: pypi: simplesam

Simple pure Python SAM parser and objects for working with SAM records
12 versions
Latest release: almost 2 years ago
283 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/simplesam

Dependent Repos 11

SwatiGiri/GenderCheck
  • ==0.1.3 Other_requirements.txt
  • ==0.1.3 requirements.txt

Size: 76.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

aneeshpanoli/pyngs
A python tool to work with next generation sequencing(NGS) data inside a Jupyter notebook - work in progress!
  • ==0.1.3.1 requirements.txt

Size: 29.3 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

SahilJoshi123/TF-Cascade
  • ==0.1.2 requirements.txt

Size: 7.16 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

mdshw5/simplesam
Simple pure Python SAM parser and objects for working with SAM records
  • * docs/requirements.txt

Size: 133 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

Aj0SK/bachelor_thesis
  • ==0.1.3.1 code/helpers/hypothesis/requirements.txt

Size: 1.3 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

mdshw5/fastqp
Simple FASTQ quality assessment using Python
  • * setup.py

Size: 2.57 MB - Last synced: 5 days ago - Pushed: almost 3 years ago

Novartis/pisces
PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.
  • * setup.py

Size: 17.6 MB - Last synced: 6 days ago - Pushed: 6 days ago

nxwi/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.33 GB - Last synced: 7 months ago - Pushed: over 1 year ago

bede/kindel
Indel-aware consensus from aligned BAMs
  • >=0.0.4 setup.py

Size: 80 MB - Last synced: 16 days ago - Pushed: 7 months ago

deepflare/airflow-bio-utils 📦
Airflow simple utilities for biological sequences
  • 0.1.4.0 poetry.lock
  • ^0.1.3 pyproject.toml

Size: 229 KB - Last synced: 4 months ago - Pushed: almost 2 years ago

illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.47 GB - Last synced: 10 days ago - Pushed: 10 days ago

edurand/fastqp Fork of mdshw5/fastqp
simple FASTQ quality assessment using Python
  • * setup.py

Size: 3.03 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

ntchambers/illacceptanything
The project where literally anything* goes
  • * requirements.txt

Last synced: over 1 year ago

baklazan/nadavca
NAnopore DAta Variant CAller
  • * setup.py

Size: 72.3 KB - Last synced: 11 months ago - Pushed: over 4 years ago

007gzs/test
  • * requirements.txt

Size: 1.6 MB - Last synced: 4 months ago - Pushed: 4 months ago

brwnj/fastqp Fork of mdshw5/fastqp
Simple FASTQ quality assessment using Python
  • * setup.py

Size: 2.51 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

TheBearodactyl/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.33 GB - Last synced: 10 months ago - Pushed: 10 months ago

papaemmelab/Asimomitis_ACM_2023
ICBBB 2023: Predicting Single Cell Genotypes from Single Cell Expression Profiles in AML Using Deep Learning
  • ==0.1.3.1 requirements.txt

Size: 66.4 KB - Last synced: 6 months ago - Pushed: 6 months ago

braillescreen/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.47 GB - Last synced: 9 months ago - Pushed: about 1 year ago

boginw/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.33 GB - Last synced: about 1 month ago - Pushed: 9 months ago

crasgaitis/442_fp
  • ==0.1.4.1 requirements.txt

Size: 1.66 MB - Last synced: 5 months ago - Pushed: 5 months ago

hubmapconsortium/visium-pipeline
  • * docker/quantification/requirements.txt

Size: 94.7 KB - Last synced: about 1 month ago - Pushed: about 1 month ago