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Package Usage: pypi: tspex

A Python package for calculating tissue-specificity metrics for gene expression.
11 versions
Latest release: 11 months ago
348 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/tspex

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/apcamargo%2Ftspex

Dependent Repos 5

aertslab/pycisTopic
pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  • * requirements.txt

Size: 33.2 MB - Last synced: 11 days ago - Pushed: about 1 month ago

aertslab/scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
  • * requirements.txt

Size: 46.6 MB - Last synced: 11 days ago - Pushed: 19 days ago

apcamargo/tspex-webapp
tspex webapp
  • ==0.5.1 celery-queue/requirements.txt

Size: 29.3 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

dburkhardt/pycisTopic Fork of aertslab/pycisTopic
pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.
  • * requirements.txt

Size: 32.3 MB - Last synced: 2 months ago - Pushed: over 1 year ago

007gzs/test
  • * requirements.txt

Size: 1.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

SameOldSamOld/scenicplus Fork of aertslab/scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
  • * requirements.txt

Size: 42.4 MB - Last synced: 11 months ago - Pushed: almost 2 years ago

simoneatt11/scenicplus_202308 Fork of aertslab/scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
  • * requirements.txt

Size: 35.6 MB - Last synced: 9 months ago - Pushed: 10 months ago

yiqisu/scenicplus Fork of aertslab/scenicplus
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
  • * requirements.txt

Size: 35.5 MB - Last synced: 8 months ago - Pushed: about 1 year ago

LieberInstitute/spatialDLPFC
spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
  • ==0.6.2 code/gene-risk-LR-analysis/requirements/.ipynb_checkpoints/requirements-checkpoint.txt

Size: 14.9 GB - Last synced: 9 days ago - Pushed: 9 days ago