Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / LieberInstitute / spatialDLPFC
spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/LieberInstitute%2FspatialDLPFC
Stars: 10
Forks: 0
Open Issues: 0
License: None
Language: HTML
Repo Size: 14.9 GB
Dependencies:
259
Created: over 3 years ago
Updated: about 13 hours ago
Last pushed: about 13 hours ago
Last synced: 18 minutes ago
Topics: bioconductor, dlpfc, rstats, spatial-transcriptomics, spatialdlpfc, transcriptomics, visium, visium-spg
Files
Dependencies
- Cython ==0.29.30
- Jinja2 ==3.1.2
- Markdown ==3.3.7
- MarkupSafe ==2.1.1
- PIMS ==0.6.1
- Pillow ==9.1.1
- PyNaCl ==1.5.0
- PyWavelets ==1.3.0
- PyYAML ==6.0
- Pygments ==2.12.0
- SQLAlchemy ==1.4.37
- Send2Trash ==1.8.0
- Werkzeug ==2.1.2
- absl-py ==1.1.0
- adjustText ==0.7.3
- aiohttp ==3.8.1
- aiosignal ==1.2.0
- airr ==1.3.1
- anndata ==0.8.0
- annoy ==1.17.0
- appnope ==0.1.3
- apsw ==3.38.5.post1
- argon2-cffi ==21.3.0
- argon2-cffi-bindings ==21.2.0
- asciitree ==0.3.3
- async-timeout ==4.0.2
- attrs ==21.4.0
- backports.zoneinfo ==0.2.1
- bbknn ==1.5.1
- bcrypt ==3.2.2
- beautifulsoup4 ==4.11.1
- biothings-client ==0.2.6
- bleach ==5.0.0
- cachetools ==5.2.0
- cffi ==1.15.0
- cgatcore ==0.6.14
- charset-normalizer ==2.0.12
- chex ==0.1.3
- click ==8.1.3
- cloudpickle ==2.2.0
- commonmark ==0.9.1
- cryptography ==37.0.2
- cycler ==0.11.0
- dask ==2022.12.0
- dask-image ==2022.9.0
- debugpy ==1.6.0
- defusedxml ==0.7.1
- dm-tree ==0.1.7
- docrep ==0.3.2
- et-xmlfile ==1.1.0
- fasteners ==0.18
- fastjsonschema ==2.15.3
- fbpca ==1.0
- flatbuffers ==2.0
- flax ==0.5.0
- fonttools ==4.33.3
- frozenlist ==1.3.0
- fsspec ==2022.5.0
- future ==0.18.2
- geosketch ==1.2
- gevent ==21.12.0
- google-auth ==2.6.6
- google-auth-oauthlib ==0.4.6
- greenlet ==1.1.2
- grpcio ==1.46.3
- h5py ==3.7.0
- harmonypy ==0.0.5
- idna ==3.3
- igraph ==0.9.10
- imageio ==2.19.3
- importlib-metadata ==4.11.4
- importlib-resources ==5.7.1
- inflect ==6.0.2
- iniconfig ==1.1.1
- intervaltree ==3.1.0
- ipykernel ==6.13.0
- ipython-genutils ==0.2.0
- ipywidgets ==7.7.0
- jax ==0.3.13
- jaxlib ==0.3.10
- joblib ==1.1.0
- jsonschema ==4.6.0
- jupyter-client ==7.3.2
- jupyterlab-pygments ==0.2.2
- jupyterlab-widgets ==1.1.0
- kiwisolver ==1.4.2
- leidenalg ==0.8.10
- llvmlite ==0.38.1
- locket ==1.0.0
- loompy ==3.0.7
- louvain ==0.7.1
- matplotlib ==3.5.2
- matplotlib-inline ==0.1.3
- matplotlib-scalebar ==0.8.1
- mistune ==0.8.4
- msgpack ==1.0.4
- multidict ==6.0.2
- multipledispatch ==0.6.0
- mygene ==3.2.2
- natsort ==8.1.0
- nbclient ==0.6.4
- nbconvert ==6.5.0
- nbformat ==5.4.0
- networkx ==2.8.3
- notebook ==6.4.11
- numba ==0.55.2
- numcodecs ==0.10.2
- numpy ==1.22.4
- numpy-groupies ==0.9.17
- numpyro ==0.9.2
- oauthlib ==3.2.0
- omnipath ==1.0.6
- openpyxl ==3.0.10
- opt-einsum ==3.3.0
- optax ==0.1.2
- packaging ==21.3
- pandas ==1.4.2
- pandocfilters ==1.5.0
- paramiko ==2.11.0
- parasail ==1.2.4
- partd ==1.3.0
- patsy ==0.5.2
- pep8 ==1.7.1
- pluggy ==1.0.0
- prometheus-client ==0.14.1
- prompt-toolkit ==3.0.29
- protobuf ==3.20.1
- psutil ==5.9.1
- py ==1.11.0
- pyDeprecate ==0.3.1
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pycparser ==2.21
- pydantic ==1.10.2
- pynndescent ==0.5.7
- pyparsing ==3.0.9
- pyreadr ==0.4.7
- pyro-api ==0.1.2
- pyro-ppl ==1.8.1
- pyrsistent ==0.18.1
- pysam ==0.19.1
- pytest ==7.1.2
- python-Levenshtein ==0.12.2
- python-igraph ==0.9.10
- pytoml ==0.1.21
- pytorch-lightning ==1.5.10
- pytz ==2022.1
- pytz-deprecation-shim ==0.1.0.post0
- requests ==2.27.1
- requests-oauthlib ==1.3.1
- rich ==12.4.4
- rpy2 ==3.5.6
- rsa ==4.8
- ruffus ==2.8.4
- scanorama ==1.7.2
- scanpy ==1.9.1
- scikit-image ==0.19.2
- scikit-learn ==1.1.1
- scikit-misc ==0.1.4
- scipy ==1.8.1
- scirpy ==0.10.1
- scrublet ==0.2.3
- scvi-tools ==0.16.3
- seaborn ==0.11.2
- session-info ==1.0.0
- setuptools-scm ==6.4.2
- sklearn ==0.0
- slicerator ==1.1.0
- sortedcontainers ==2.4.0
- soupsieve ==2.3.2.post1
- squarify ==0.4.3
- squidpy ==1.2.3
- statsmodels ==0.13.2
- stdlib-list ==0.8.0
- tangram-sc ==1.0.3
- tensorboard ==2.9.0
- tensorboard-data-server ==0.6.1
- tensorboard-plugin-wit ==1.8.1
- terminado ==0.15.0
- test ==0.0.1
- texttable ==1.6.4
- threadpoolctl ==3.1.0
- tifffile ==2022.5.4
- tinycss2 ==1.1.1
- tomli ==2.0.1
- toolz ==0.11.2
- torch ==1.11.0
- torchmetrics ==0.9.0
- tqdm ==4.64.0
- traitlets ==5.2.2.post1
- tspex ==0.6.2
- typing_extensions ==4.2.0
- tzdata ==2022.6
- tzlocal ==4.2
- umap-learn ==0.5.3
- urllib3 ==1.26.9
- validators ==0.20.0
- webencodings ==0.5.1
- widgetsnbextension ==3.6.0
- wrapt ==1.14.1
- xarray ==2022.12.0
- xlrd ==2.0.1
- yamlordereddictloader ==0.4.0
- yarl ==1.7.2
- zarr ==2.13.3
- zipp ==3.8.0
- zope.event ==4.5.0
- zope.interface ==5.4.0
- Pillow ==9.0.1
- PyDispatcher ==2.0.5
- PyYAML ==6.0
- TBB ==0.2
- anaconda-navigator ==2.1.4
- appdirs ==1.4.4
- atomicwrites ==1.4.0
- backports.weakref ==1.0.post1
- bkcharts ==0.2
- black ==19.10b0
- brotlipy ==0.7.0
- certifi ==2021.10.8
- clyent ==1.2.2
- conda ==4.12.0
- conda-build ==3.21.8
- conda-verify ==3.4.2
- constantly ==15.1.0
- cssselect ==1.1.0
- cytoolz ==0.11.0
- daal4py ==2021.5.0
- datashape ==0.5.4
- et-xmlfile ==1.1.0
- fonttools ==4.25.0
- inflection ==0.5.1
- llvmlite ==0.38.0
- mccabe ==0.6.1
- mkl-fft ==1.3.1
- mkl-service ==2.4.0
- mpmath ==1.2.1
- munkres ==1.1.4
- mypy-extensions ==0.4.3
- navigator-updater ==0.2.1
- pandas ==1.4.2
- pathspec ==0.7.0
- patsy ==0.5.2
- pep8 ==1.7.1
- protobuf ==3.19.1
- pyasn1-modules ==0.2.8
- pycosat ==0.6.3
- pycurl ==7.44.1
- pyls-spyder ==0.4.0
- pytest ==7.1.1
- python-lsp-jsonrpc ==1.0.0
- python-lsp-server ==1.2.4
- pytz ==2021.3
- queuelib ==1.5.0
- scikit-learn-intelex ==2021.20220215.212715
- sip ==4.19.13
- tabulate ==0.8.9
- webencodings ==0.5.1
- zict ==2.0.0