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Package Usage: pypi: varcode

Variant annotation in Python
67 versions
Latest release: over 1 year ago
4 dependent packages
573 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/varcode

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/openvax%2Fvarcode

Dependent Repos 21

Tobi-De/dj-shop-cart
A simple and flexible cart manager for your django projects.
  • 1.0.3 example/poetry.lock

Size: 1.13 MB - Last synced: 27 days ago - Pushed: 7 months ago

KarchinLab/mhcnuggets
MHC Class I and Class II neoantigen binding prediction
  • * requirements.txt
  • * setup.py

Size: 135 MB - Last synced: 18 days ago - Pushed: about 1 year ago

openvax/mhctools
Python interface to running command-line and web-based MHC binding predictors
  • >=0.5.9 requirements.txt
  • >=0.5.9 setup.py

Size: 531 KB - Last synced: 20 days ago - Pushed: about 2 months ago

mrichters/pVACtools Fork of griffithlab/pVACtools
  • ==1.0.3 requirements.txt

Size: 338 MB - Last synced: 27 days ago - Pushed: 27 days ago

hammerlab/cycledash
Variant Caller Analysis Dashboard and Data Management System
  • ==0.3.11 requirements.txt

Size: 80.2 MB - Last synced: 7 months ago - Pushed: over 8 years ago

as1000/neop
Python Package for Predicting Neoantigens and Obtaining Amino Acid Context from MAFs
  • >=1.0.3 requirements.txt
  • >=1.0.3 setup.py

Size: 1010 KB - Last synced: 18 days ago - Pushed: about 3 years ago

y9c/variant
python utils for genomic variant (WIP)
  • * pyproject.toml

Size: 416 KB - Last synced: 4 days ago - Pushed: 4 months ago

openvax/vaxrank
Ranked vaccine peptides for personalized cancer immunotherapy
  • >=0.5.9 requirements.txt
  • >=0.5.9 setup.py

Size: 986 KB - Last synced: 4 days ago - Pushed: 4 days ago

openvax/varlens
commandline manipulation of genomic variants and NGS reads
  • * setup.py

Size: 38.2 MB - Last synced: 2 days ago - Pushed: about 6 years ago

jfnavarro/hla_pipeline
DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
  • * setup.py

Size: 1.55 MB - Last synced: 7 months ago - Pushed: almost 3 years ago

openvax/topiary
Predict mutated T-cell epitopes from sequencing data
  • >=0.3.17 requirements.txt
  • * setup.py

Size: 235 KB - Last synced: 14 days ago - Pushed: about 6 years ago

iskandr/msmhc
Looking for "dark matter" of the MHC ligandome in mass specta
  • * requirements.txt
  • * setup.py

Size: 463 KB - Last synced: 2 days ago - Pushed: over 4 years ago

GenEditID/GenEditID
A flexible, open-access workflow to facilitate the identification of cell clones that have desirable CRISPR-Cas9-induced gene edits.
  • ==1.0.3 python/setup.py

Size: 27.1 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

MonashBioinformaticsPlatform/crispr_results
Crispr report post alignment + freebayes, quality/depth thresholding
  • ==0.4.18 requirements.txt

Size: 147 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

ctokheim/deepDegron
Deep learning model to predict degron sequences
  • * environment.yml
  • * requirements.txt
  • * setup.py

Size: 2.47 MB - Last synced: 5 months ago - Pushed: about 1 year ago

nxwi/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.33 GB - Last synced: 8 months ago - Pushed: over 1 year ago

hammerlab/cohorts
Utilities for analyzing mutations and neoepitopes in patient cohorts
  • >=0.5.15,<0.6.0 requirements.txt

Size: 555 KB - Last synced: 14 days ago - Pushed: almost 6 years ago

openvax/isovar
Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence
  • >=0.9.0 requirements.txt
  • >=0.9.0 setup.py

Size: 39.6 MB - Last synced: 2 months ago - Pushed: 3 months ago

carlomazzaferro/neoantigen
package to obtain neoantigen candidates from a vcf file.
  • * VarP.egg-info/requires.txt
  • * neoantigen/VarP-master/VarP.egg-info/requires.txt

Size: 16.5 MB - Last synced: 14 days ago - Pushed: over 7 years ago

illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.47 GB - Last synced: 10 days ago - Pushed: 10 days ago

melsiddieg/varlens Fork of openvax/varlens
slice and dice next-generation sequencing reads and variants
  • * setup.py

Size: 29.3 MB - Last synced: about 1 year ago - Pushed: over 8 years ago

ntchambers/illacceptanything
The project where literally anything* goes
  • * requirements.txt

Last synced: over 1 year ago

WangZhenfei/cycledash Fork of hammerlab/cycledash
Variant Caller Analysis Dashboard and Data Management System
  • ==0.3.11 requirements.txt

Size: 56.8 MB - Last synced: about 1 year ago - Pushed: almost 9 years ago

pombredanne/varlens Fork of openvax/varlens
commandline / python manipulation of NGS reads and variants
  • * setup.py

Size: 38.2 MB - Last synced: about 1 month ago - Pushed: over 8 years ago

007gzs/test
  • * requirements.txt

Size: 1.6 MB - Last synced: 4 months ago - Pushed: 4 months ago

TheBearodactyl/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.33 GB - Last synced: 10 months ago - Pushed: 10 months ago

haoziyeung/cycledash Fork of hammerlab/cycledash
Variant Caller Analysis Dashboard and Data Management System有时间看看，这个可能是做在线的数据筛选的
  • ==0.3.11 requirements.txt

Size: 80.2 MB - Last synced: 10 months ago - Pushed: over 8 years ago

ssec-jhu/mhctools Fork of openvax/mhctools
Python interface to running command-line and web-based MHC binding predictors
  • >=0.5.9 requirements.txt
  • >=0.5.9 setup.py

Size: 430 KB - Last synced: 10 months ago - Pushed: 10 months ago

braillescreen/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.47 GB - Last synced: 9 months ago - Pushed: about 1 year ago

boginw/illacceptanything Fork of illacceptanything/illacceptanything
The project where literally anything* goes.
  • * data/requirements.txt

Size: 1.33 GB - Last synced: about 1 month ago - Pushed: 9 months ago

Layth17/pVACtools Fork of griffithlab/pVACtools
  • >=1.1.0 setup.py

Size: 235 MB - Last synced: 2 months ago - Pushed: 2 months ago

adamtongji/isovar Fork of openvax/isovar
Abundance quantification of distinct transcript sequences containing somatic variants from cancer RNAseq
  • >=0.5.9 requirements.txt
  • >=0.5.9 setup.py

Size: 39.3 MB - Last synced: 8 months ago - Pushed: almost 6 years ago

adamtongji/vaxrank Fork of openvax/vaxrank
Ranked vaccine peptides for personalized cancer immunotherapy
  • >=0.5.9 requirements.txt
  • >=0.5.9 setup.py

Size: 781 KB - Last synced: 8 months ago - Pushed: almost 6 years ago

Pandinosaurus/mhcflurry Fork of openvax/mhcflurry
Peptide-MHC I binding affinity prediction
  • ==0.5.15 docs/environment.yml

Size: 29 MB - Last synced: 7 months ago - Pushed: 7 months ago

griffithlab/pVACtools
  • >=1.1.0 setup.py

Size: 349 MB - Last synced: 2 days ago - Pushed: 2 days ago

dxkeac/Neo_ML
  • ==1.1.0 requirements.txt

Size: 0 Bytes - Last synced: 3 months ago - Pushed: 3 months ago