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GitHub / hammerlab / cohorts
Utilities for analyzing mutations and neoepitopes in patient cohorts
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hammerlab%2Fcohorts
Stars: 20
Forks: 4
Open Issues: 67
License: apache-2.0
Language: Python
Repo Size: 555 KB
Dependencies:
23
Created: about 8 years ago
Updated: over 1 year ago
Last pushed: about 6 years ago
Last synced: 8 days ago
Files
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Readme
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Dependencies
requirements.txt
pypi
- dill >=0.2.5
- google-cloud-storage >=1.1.1
- isovar >=0.5.2
- lifelines >=0.9.3.2
- mhcnames ==0.1.0
- mhctools >=0.3.0,<0.4.0
- mock >=2.0.0
- nose >=1.3.3
- pandas >=0.15
- patsy >=0.4.1
- pyensembl >=1.0.1,<1.1.0
- pylint >=1.4.4
- pysam >=0.9.0
- scikit-bio ==0.4.2
- scikit-learn >=0.17.1
- scipy >=0.17.0
- seaborn >=0.7.0
- serializable >=0.0.8
- topiary >=0.1.0,<0.2.0
- tqdm >=4.10.0
- varcode >=0.5.15,<0.6.0
- vcf-annotate-polyphen >=0.1.2