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GitHub / AllenInstitute / scrattch.mapping
Genearlized mapping scripts for RNA-seq and Patch-seq data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AllenInstitute%2Fscrattch.mapping
Stars: 5
Forks: 2
Open Issues: 7
License: None
Language: R
Repo Size: 3.83 MB
Dependencies:
31
Created: over 1 year ago
Updated: about 1 month ago
Last pushed: about 1 month ago
Last synced: about 1 month ago
Files
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Readme
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Dependencies
DESCRIPTION
cran
- BiocNeighbors * depends
- Matrix * depends
- MatrixGenerics * depends
- RANN * depends
- Seurat * depends
- anndata * depends
- arrow * depends
- cowplot * depends
- dendextend * depends
- dplyr * depends
- feather * depends
- foreach * depends
- mfishtools * depends
- patchSeqQC * depends
- patchseqtools * depends
- pvclust * depends
- scrattch.bigcat * depends
- scrattch.hicat * depends
- scrattch.io * depends
- scrattch.taxonomy * depends
- scrattch.vis * depends
- tibble * depends
- umap * depends
- viridis * depends
- doMC * suggests
- future * suggests
- knitr * suggests
- parallel * suggests
- rmarkdown * suggests
- testthat * suggests
Dockerfile
docker
- rocker/tidyverse 4.2 build