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GitHub / Donwulff / Exomiser
A Tool to Annotate and Prioritize Exome Variants
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Donwulff%2FExomiser
Fork of exomiser/Exomiser
Stars: 0
Forks: 0
Open Issues: 0
License: agpl-3.0
Language: Java
Repo Size: 245 MB
Dependencies:
127
Created: almost 4 years ago
Updated: over 2 years ago
Last pushed: over 2 years ago
Last synced: 25 days ago
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Dependencies
- actions/checkout v2 composite
- checkmarx-ts/checkmarx-cxflow-github-action v1.0 composite
- github/codeql-action/upload-sarif v1 composite
- actions/checkout v2 composite
- codacy/codacy-analysis-cli-action 1.1.0 composite
- github/codeql-action/upload-sarif v1 composite
- actions/checkout v2 composite
- github/codeql-action/analyze v1 composite
- github/codeql-action/autobuild v1 composite
- github/codeql-action/init v1 composite
- actions/checkout v2 composite
- github/codeql-action/upload-sarif v1 composite
- microsoft/DevSkim-Action v1 composite
- actions/checkout v2 composite
- actions/setup-java v1 composite
- fortify/gha-export-vulnerabilities fcb374411cff9809028c911dabb8b57dbdae623b composite
- fortify/gha-setup-fod-uploader 6e6bb8a33cb476e240929fa8ebc739ff110e7433 composite
- fortify/gha-setup-scancentral-client 5b7382f8234fb9840958c49d5f32ae854115f9f3 composite
- github/codeql-action/upload-sarif v1 composite
- actions/checkout v2 composite
- github/codeql-action/upload-sarif v1 composite
- returntocorp/semgrep-action v1 composite
- ShiftLeftSecurity/scan-action master composite
- actions/checkout v2 composite
- github/codeql-action/upload-sarif v1 composite
- actions/checkout v2 composite
- blackducksoftware/github-action 9ea442b34409737f64743781e9adc71fd8e17d38 composite
- github/codeql-action/upload-sarif v1 composite
- synopsys-sig/intelligent-security-scan 48eedfcd42bc342a294dc495ac452797b2d9ff08 composite
- actions/checkout v2 composite
- actions/setup-java v1 composite
- actions/upload-artifact v1 composite
- github/codeql-action/upload-sarif v1 composite
- papeloto/action-zip v1 composite
- veracode/veracode-pipeline-scan-results-to-sarif master composite
- wei/curl master composite
- RIGS-IT/xanitizer-action v1 composite
- actions/checkout v2 composite
- actions/setup-java v1 composite
- actions/upload-artifact v2 composite
- github/codeql-action/upload-sarif v1 composite
exomiser-cli/pom.xml
maven
exomiser-core/pom.xml
maven
- com.fasterxml.jackson.core:jackson-annotations
- com.fasterxml.jackson.core:jackson-databind
- com.fasterxml.jackson.dataformat:jackson-dataformat-yaml
- com.fasterxml.jackson.datatype:jackson-datatype-jdk7 2.6.7
- com.github.samtools:htsjdk ${htsjdk.version}
- de.charite.compbio:jannovar-htsjdk ${jannovar.version}
- de.sonumina:javautil 0.0.1
- javax.annotation:javax.annotation-api
- ontologizer:ontologizer 0.0.1-SNAPSHOT
- org.apache.commons:commons-csv 1.1
- org.jblas:jblas 1.2.3
- org.thymeleaf:thymeleaf
- org.thymeleaf:thymeleaf-spring5
- org.yaml:snakeyaml
- ch.qos.logback:logback-classic test
- org.codehaus.groovy:groovy test
- org.hamcrest:hamcrest-library test
- org.jsoup:jsoup 1.8.1 test
- org.skyscreamer:jsonassert test
- org.monarchinitiative.exomiser:exomiser-spring-boot-starter 12.1.0
- org.springframework.boot:spring-boot-starter-actuator
- org.springframework.boot:spring-boot-starter-web
- org.monarchinitiative.exomiser:exomiser-spring-boot-test 12.1.0 test
- org.springframework.boot:spring-boot-starter-test test
- org.springframework.restdocs:spring-restdocs-mockmvc test
- org.springframework:spring-web 5.1.3.RELEASE compile
- org.monarchinitiative.exomiser:exomiser-core 12.1.0
- org.springframework.boot:spring-boot-autoconfigure
- org.springframework.boot:spring-boot-configuration-processor
- org.springframework.boot:spring-boot-dependencies ${spring-boot.version}
- org.springframework.boot:spring-boot-starter-cache
- org.mockito:mockito-core test
- org.springframework.boot:spring-boot-starter-test test
exomiser-web/pom.xml
maven
- com.fasterxml.jackson.core:jackson-annotations
- com.github.ben-manes.caffeine:caffeine
- io.micrometer:micrometer-registry-prometheus
- org.monarchinitiative.exomiser:exomiser-spring-boot-starter 12.1.0
- org.springframework.boot:spring-boot-starter-actuator
- org.springframework.boot:spring-boot-starter-test
- org.springframework.boot:spring-boot-starter-thymeleaf
- org.springframework.boot:spring-boot-starter-web
- org.webjars:bootstrap 3.3.7-1
- org.webjars:chosen 1.3.0
- org.webjars:jquery 2.1.4
- com.jayway.jsonpath:json-path-assert test
- org.monarchinitiative.exomiser:exomiser-spring-boot-test 12.1.0 test
pom.xml
maven
- org.springframework.boot:spring-boot-dependencies 2.1.3.RELEASE import
- com.fasterxml.jackson.dataformat:jackson-dataformat-protobuf
- com.fasterxml.jackson.dataformat:jackson-dataformat-yaml
- com.google.guava:guava 22.0
- com.google.protobuf:protobuf-java 3.7.0
- com.google.protobuf:protobuf-java-util 3.7.0
- com.h2database:h2
- com.impossibl.pgjdbc-ng:pgjdbc-ng 0.4
- com.zaxxer:HikariCP
- org.springframework.boot:spring-boot
- org.springframework:spring-context
- org.springframework:spring-context-support
- org.springframework:spring-core
- org.springframework:spring-jdbc
- net.bytebuddy:byte-buddy test
- org.hamcrest:hamcrest-core test
- org.junit-pioneer:junit-pioneer 0.1.2 test
- org.junit.jupiter:junit-jupiter-api test
- org.junit.jupiter:junit-jupiter-engine test
- org.mockito:mockito-junit-jupiter 2.21.0 test
- org.springframework:spring-test test