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GitHub / Genomic-Medicine-Linkoping / gmsmetapost
GMS Metagenomics post-classification
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Genomic-Medicine-Linkoping%2Fgmsmetapost
Fork of genomic-medicine-sweden/gmsmetapost
Stars: 0
Forks: 0
Open Issues: 0
License: mit
Language: Nextflow
Repo Size: 2.32 MB
Dependencies:
18
Created: almost 2 years ago
Updated: almost 2 years ago
Last pushed: over 1 year ago
Last synced: about 1 year ago
Files
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Readme
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Dependencies
- actions/checkout v3 composite
- docker/build-push-action v3 composite
- docker/login-action v2 composite
- docker/setup-buildx-action v2 composite
- docker/setup-qemu-action v2 composite
- biopython >=1.79
- blast 2.13.0.*
- pandas 1.4.3.*
- parallel 20220722.*
- python >=3.9
- r-base >=4.1.1
- r-hrbrthemes >=0.8.0
- r-htmltools >=0.5.3
- r-plotly >=4.8.0
- r-tidyverse >=1.3.2
- taxonkit 0.12.0.*
conf/environments/Dockerfile
docker
- continuumio/miniconda3 4.12.0 build
- debian buster-slim build