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GitHub / HALFpipe / HALFpipe
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/HALFpipe%2FHALFpipe
Stars: 59
Forks: 11
Open Issues: 93
License: other
Language: Python
Repo Size: 5.32 MB
Dependencies:
188
Created: almost 4 years ago
Updated: 27 days ago
Last pushed: about 1 month ago
Last synced: about 1 month ago
Topics: bids, fmri, meta-analysis, neuroimaging, pipeline, reproducibility
Files
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Readme
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Dependencies
pyproject.toml
pypi
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/download-artifact v3 composite
- actions/upload-artifact v3 composite
- codecov/codecov-action v3 composite
- github/super-linter/slim v4 composite
Dockerfile
docker
- nipreps/fmriprep 20.2.7 build
requirements-test.in
pypi
- pytest * test
- pytest-cov * test
- pytest-env * test
- pytest-github-actions-annotate-failures * test
- pytest-timeout * test
- attrs ==21.4.0 test
- coverage ==6.3.3 test
- iniconfig ==1.1.1 test
- packaging ==21.3 test
- pluggy ==1.0.0 test
- pyparsing ==3.0.9 test
- pytest ==7.2.1 test
- pytest-cov ==4.0.0 test
- pytest-env ==0.8.1 test
- pytest-github-actions-annotate-failures ==0.1.8 test
- pytest-timeout ==2.1.0 test
- tomli ==2.0.1 test
requirements.in
pypi
- Pint >=0.17
- XlsxWriter >=1.4.4
- chardet *
- fasteners >=0.15
- flufl.lock >=5.0.3
- frozendict >=2.0.6
- gmpy2 >=2.0.8
- indexed-gzip >=1.6.4
- inflect >=5.3.0
- inflection >=0.5.1
- line-profiler >=4.0.1
- marshmallow >=3.10.0
- marshmallow-dataclass >=8.5.3
- marshmallow-enum *
- marshmallow-oneofschema *
- matplotlib <3.7
- more-itertools >=8.7.0
- mpmath >=1.1.0
- nibabel >=4.0.0
- nipype >=1.8.1
- numpy >=1.20
- odfpy >=1.4.1
- openpyxl >=3.0.7
- pandas >=1.2.0
- parse >=1.19.0
- patsy >=0.5.2
- psutil >=5.8.0
- pybids >=0.13.1
- pympler >=0.9
- pyrsistent >=0.18.1
- pysocks >=1.7.1
- requests >=2.25.1
- scikit-image >=0.19
- scikit-learn >=0.24
- scipy >=1.8.0,
- sdcflows *
- seaborn >=0.11.1
- setuptools_scm >=6.2
- stackprinter >=0.2.5
- statsmodels >=0.12.2
- svgutils >=0.3.1
- tabulate >=0.8.9
- templateflow >=0.7.1
- typeguard *
- typing_extensions >=3.10.0.0
- wheel *
- xlrd >=1.0.0
.github/workflows/build.yml
actions
- actions/checkout v2 composite
- crazy-max/ghaction-docker-meta v1 composite
- docker/build-push-action v3 composite
- docker/login-action v1 composite
- docker/login-action v2 composite
- docker/setup-buildx-action v2 composite