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GitHub / IMCF-Biocev / Simonik2022

The project aims to measure and analyse the change of angle between cell and sperm cell during their interaction.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/IMCF-Biocev%2FSimonik2022

Stars: 0
Forks: 0
Open Issues: 0

License: None
Language: Jupyter Notebook
Repo Size: 82 KB
Dependencies: 294

Created: almost 2 years ago
Updated: over 1 year ago
Last pushed: almost 2 years ago
Last synced: about 1 year ago

Files

Readme

Dependencies

requirements.txt pypi

adwaita-icon-theme =40.1.1=hca03da5_1
aicsimageio =4.0.5=pypi_0
aicssegmentation =0.4.2=pypi_0
alabaster =0.7.12=pyhd3eb1b0_0
appdirs =1.4.4=pyhd3eb1b0_0
appnope =0.1.2=py39h2804cbe_2
argon2-cffi =21.3.0=pypi_0
argon2-cffi-bindings =21.2.0=pypi_0
asciitree =0.3.3=py_2
atk-1.0 =2.36.0=h7fe96df_0
attrs =21.2.0=pyhd3eb1b0_0
babel =2.9.1=pyhd3eb1b0_0
backcall =0.2.0=pyh9f0ad1d_0
backports =1.0=py_2
backports.functools_lru_cache =1.6.4=pyhd8ed1ab_0
beautifulsoup4 =4.10.0=pypi_0
bleach =4.1.0=pypi_0
blosc =1.21.0=h98b2900_0
bokeh =2.4.2=py39hca03da5_0
boto3 =1.21.26=pypi_0
botocore =1.24.26=pypi_0
bottleneck =1.3.2=py39heec5a64_1
brotli =1.0.7=hc377ac9_0
brotlipy =0.7.0=py39h1a28f6b_1002
brunsli =0.1=hc377ac9_1
bzip2 =1.0.8=h620ffc9_4
c-ares =1.17.1=h1a28f6b_0
ca-certificates =2021.10.26=hca03da5_2
cachey =0.2.1=pyh9f0ad1d_0
cairo =1.16.0=h0ab239c_1
certifi =2021.5.30=py39hca03da5_1
cffi =1.14.5=py39h9e348fd_0
cfitsio =3.470=ha83d327_7
charls =2.2.0=hc377ac9_0
charset-normalizer =2.0.4=pyhd3eb1b0_0
click =8.0.3=pyhd3eb1b0_0
cloudpickle =2.0.0=pyhd3eb1b0_0
colorama =0.4.4=pyhd3eb1b0_0
colorcet =3.0.0=pypi_0
connected-components-3d =3.9.1=pypi_0
cryptography =36.0.0=py39h834c97f_0
cycler =0.11.0=pyhd3eb1b0_0
cytoolz =0.11.0=py39h1a28f6b_0
dask =2021.10.0=pyhd3eb1b0_0
dask-core =2021.10.0=pyhd3eb1b0_0
dbus =1.13.18=h8280c03_0
debugpy =1.5.1=py39hfb83b0d_0
decorator =5.1.0=pyhd8ed1ab_0
defusedxml =0.7.1=pypi_0
distributed =2021.10.0=py39hca03da5_0
dnspython =2.2.1=pypi_0
docstring_parser =0.13=pyhd8ed1ab_0
docutils =0.17.1=py39hca03da5_1
elementpath =2.5.0=pypi_0
email-validator =1.1.3=pypi_0
empanada =0.0.3=pypi_0
entrypoints =0.3=pyhd8ed1ab_1003
epoxy =1.5.4=h1a28f6b_2
expat =2.4.1=hc377ac9_2
fasteners =0.16.3=pyhd3eb1b0_0
fontconfig =2.13.1=h1f4a5ec_0
fonttools =4.25.0=pyhd3eb1b0_0
freetype =2.11.0=h1192e45_0
freetype-py =2.2.0=pyhd3eb1b0_0
fribidi =1.0.10=h1a28f6b_0
fsspec =2021.10.1=pyhd3eb1b0_0
future =0.18.2=pypi_0
gdk-pixbuf =2.42.6=h74ef11a_4
gettext =0.21.0=h826f4ad_0
giflib =5.2.1=h1a28f6b_0
glib =2.69.0=haf49608_0
gobject-introspection =1.68.0=py39h5201060_2
graphite2 =1.3.14=h0e5e14a_0
gtk3 =3.24.21=h321fa23_1
harfbuzz =2.8.1=hffeda63_0
heapdict =1.0.1=pyhd3eb1b0_0
hicolor-icon-theme =0.17=hca03da5_2
hsluv =5.0.2=pyhd3eb1b0_0
icu =68.1=hc377ac9_0
idna =3.3=pyhd3eb1b0_0
imagecodecs =2021.8.26=py39hcc9a352_0
imageio =2.9.0=pyhd3eb1b0_0
imagesize =1.3.0=pyhd3eb1b0_0
imbalanced-learn =0.9.0=pypi_0
imblearn =0.0=pypi_0
importlib-metadata =4.8.2=py39hca03da5_0
importlib_metadata =4.8.2=hd3eb1b0_0
ipydatawidgets =4.2.0=pypi_0
ipykernel =6.6.0=py39h32adebf_0
ipympl =0.8.8=pypi_0
ipython =7.30.1=py39h2804cbe_0
ipython_genutils =0.2.0=pyhd3eb1b0_1
ipywidgets =7.7.0=pypi_0
itk =5.2.1.post1=pypi_0
itk-core =5.2.1.post1=pypi_0
itk-filtering =5.2.1.post1=pypi_0
itk-io =5.2.1.post1=pypi_0
itk-numerics =5.2.1.post1=pypi_0
itk-registration =5.2.1.post1=pypi_0
itk-segmentation =5.2.1.post1=pypi_0
itkwidgets =0.19.0=pypi_0
javabridge =1.0.16=pypi_0
jedi =0.18.1=py39h2804cbe_0
jinja2 =3.0.2=pyhd3eb1b0_0
jmespath =1.0.0=pypi_0
joblib =1.1.0=pypi_0
jpeg =9d=h1a28f6b_0
jsonschema =3.2.0=pyhd3eb1b0_2
jupyter =1.0.0=pypi_0
jupyter-console =6.4.3=pypi_0
jupyter_client =7.1.0=pyhd8ed1ab_0
jupyter_core =4.9.1=py39h2804cbe_1
jupyterlab-pygments =0.1.2=pypi_0
jupyterlab-widgets =1.1.0=pypi_0
jxrlib =1.1=h1a28f6b_2
kiwisolver =1.3.1=py39hc377ac9_0
krb5 =1.19.2=hd92b7a7_3
lcms2 =2.12=hba8e193_0
lerc =3.0=hc377ac9_0
libaec =1.0.4=hc377ac9_1
libblas =3.9.0=12_osxarm64_openblas
libcblas =3.9.0=12_osxarm64_openblas
libcurl =7.80.0=hc6d1d07_0
libcxx =12.0.0=hf6beb65_1
libdeflate =1.8=h1a28f6b_5
libedit =3.1.20191231=hc8eb9b7_2
libev =4.33=h1a28f6b_1
libevent =2.1.8=hf27765b_0
libffi =3.3=hc377ac9_2
libgfortran =5.0.0.dev0=11_0_1_hf114ba7_23
libgfortran5 =11.0.1.dev0=hf114ba7_23
libiconv =1.16=h1230e6a_0
liblapack =3.9.0=12_osxarm64_openblas
libnghttp2 =1.46.0=h95c9599_0
libopenblas =0.3.18=openmp_h5dd58f0_0
libpng =1.6.37=hb8d0fd4_0
libpq =12.9=h65cfe13_1
librsvg =2.50.7=h90a7944_0
libsodium =1.0.18=h27ca646_1
libssh2 =1.9.0=hf27765b_1
libtiff =4.2.0=h11e2f9f_0
libwebp =1.2.0=h68602c7_0
libwebp-base =1.2.0=h1a28f6b_0
libxml2 =2.9.12=h8c5e841_0
libxslt =1.1.34=h9833966_0
libzopfli =1.0.3=hc377ac9_0
llvm-openmp =12.0.1=hf3c4609_1
locket =0.2.1=py39hca03da5_1
lz4-c =1.9.3=hc377ac9_0
magicgui =0.4.0=pypi_0
markupsafe =2.0.1=py39h1a28f6b_0
matplotlib =3.5.0=py39hca03da5_0
matplotlib-base =3.5.0=py39h9197a36_0
matplotlib-inline =0.1.3=pyhd8ed1ab_0
mistune =0.8.4=pypi_0
mpmath =1.2.1=pypi_0
msgpack-python =1.0.2=py39h525c30c_1
munkres =1.1.4=py_0
napari =0.4.12=pyhd8ed1ab_0
napari-allencell-segmenter =1.1.4=pypi_0
napari-console =0.0.4=pyhd8ed1ab_0
napari-plugin-engine =0.2.0=pyhd8ed1ab_2
napari-svg =0.1.5=pyhd8ed1ab_0
napari-text-layer =0.1.2=pypi_0
natsort =8.1.0=pypi_0
nbclient =0.5.13=pypi_0
nbconvert =6.4.4=pypi_0
nbformat =5.2.0=pypi_0
ncurses =6.2=hc4ed4cf_0
nest-asyncio =1.5.4=pyhd8ed1ab_0
networkx =2.6.3=pyhd3eb1b0_0
ninja =1.10.2=py39h525c30c_3
notebook =6.4.10=pypi_0
npe2 =0.3.0=pypi_0
nspr =4.30=h0e5e14a_0
nss =3.69=h142855e_0
numcodecs =0.9.1=py39hc377ac9_0
numexpr =2.8.1=py39h144ceef_0
numpy =1.21.6=pypi_0
numpydoc =1.1.0=pyhd3eb1b0_1
olefile =0.46=pyhd3eb1b0_0
ome-types =0.2.10=pypi_0
opencv-python =4.5.5.62=pypi_0
opencv-python-headless =4.5.5.64=pypi_0
openjpeg =2.3.0=h7a6adac_2
openssl =1.1.1l=h3422bc3_0
packaging =21.3=pyhd3eb1b0_0
pandas =1.3.4=py39h9197a36_0
pandocfilters =1.5.0=pypi_0
pango =1.48.7=h79d33a7_0
param =1.12.0=pypi_0
parso =0.8.3=pyhd8ed1ab_0
partd =1.2.0=pyhd3eb1b0_0
pcre =8.45=hc377ac9_0
pexpect =4.8.0=pyh9f0ad1d_2
pickleshare =0.7.5=py_1003
pillow =9.1.0=pypi_0
pint =0.18=pyhd8ed1ab_0
pip =21.2.4=py39hca03da5_0
pixman =0.40.0=h1a28f6b_0
pooch =1.6.0=pypi_0
prometheus-client =0.13.1=pypi_0
prompt-toolkit =3.0.24=pyha770c72_0
psutil =5.8.0=py39h1a28f6b_1
psygnal =0.3.4=pypi_0
ptyprocess =0.7.0=pyhd3deb0d_0
pycparser =2.21=pyhd3eb1b0_0
pyct =0.4.8=pypi_0
pydantic =1.9.0=pypi_0
pygments =2.11.1=pyhd8ed1ab_0
pyopengl =3.1.1a1=py39hca03da5_0
pyopenssl =21.0.0=pyhd3eb1b0_1
pyparsing =3.0.4=pyhd3eb1b0_0
pyqt =5.15.2=py39he8f2410_0
pyqt5-sip =4.19.25=pypi_0
pyqtchart =5.15.2=pypi_0
pyrsistent =0.18.0=py39h1a28f6b_0
pysocks =1.7.1=py39hca03da5_0
python =3.9.0=h4b4120c_5_cpython
python-bioformats =1.5.2=pypi_0
python-dateutil =2.8.2=pyhd8ed1ab_0
python-graphviz =0.20=pypi_0
python_abi =3.9=2_cp39
pytomlpp =1.0.11=pypi_0
pytz =2021.3=pyhd3eb1b0_0
pywavelets =1.1.1=py39heec5a64_4
pyyaml =6.0=py39h1a28f6b_0
pyzmq =22.3.0=py39h02c6a76_1
qt =5.15.2=h4e944ae_2
qtconsole =5.1.1=pyhd3eb1b0_0
qtpy =1.10.0=pyhd3eb1b0_0
readline =8.1=h1a28f6b_0
requests =2.26.0=pyhd3eb1b0_0
s3transfer =0.5.2=pypi_0
scikit-image =0.18.3=py39h9197a36_0
scikit-learn =1.0.2=pypi_0
scipy =1.7.3=py39h5060c3b_0
seaborn =0.11.2=pypi_0
segmentation-models =0.1.2=pypi_0
send2trash =1.8.0=pypi_0
setuptools =58.0.4=py39hca03da5_1
shapely =1.8.1.post1=pypi_0
six =1.16.0=pyh6c4a22f_0
sklearn =0.0=pypi_0
snappy =1.1.8=hc377ac9_0
snowballstemmer =2.2.0=pyhd3eb1b0_0
sortedcontainers =2.4.0=pyhd3eb1b0_0
soupsieve =2.3.1=pypi_0
sphinx =4.2.0=pyhd3eb1b0_1
sphinxcontrib-applehelp =1.0.2=pyhd3eb1b0_0
sphinxcontrib-devhelp =1.0.2=pyhd3eb1b0_0
sphinxcontrib-htmlhelp =2.0.0=pyhd3eb1b0_0
sphinxcontrib-jsmath =1.0.1=pyhd3eb1b0_0
sphinxcontrib-qthelp =1.0.3=pyhd3eb1b0_0
sphinxcontrib-serializinghtml =1.1.5=pyhd3eb1b0_0
sqlite =3.37.0=h1058600_0
superqt =0.2.5.post1=pyhd8ed1ab_0
sympy =1.10.1=pypi_0
tblib =1.7.0=pyhd3eb1b0_0
terminado =0.13.3=pypi_0
testpath =0.6.0=pypi_0
threadpoolctl =3.1.0=pypi_0
tifffile =2021.7.2=pyhd3eb1b0_2
tk =8.6.11=hb8d0fd4_0
toolz =0.11.2=pyhd3eb1b0_0
torch =1.11.0=pypi_0
tornado =6.1=py39h5161555_2
tqdm =4.62.3=pyhd3eb1b0_1
traitlets =5.1.1=pyhd8ed1ab_0
traittypes =0.2.1=pypi_0
typer =0.4.1=pypi_0
typing-extensions =3.10.0.2=hd3eb1b0_0
typing_extensions =3.10.0.2=pyh06a4308_0
tzdata =2021e=hda174b7_0
urllib3 =1.26.7=pyhd3eb1b0_0
vispy =0.10.0=pypi_0
wcwidth =0.2.5=pyh9f0ad1d_2
webencodings =0.5.1=pypi_0
wheel =0.37.0=pyhd3eb1b0_1
widgetsnbextension =3.6.0=pypi_0
wrapt =1.13.3=py39h1a28f6b_2
xarray =0.16.2=pypi_0
xgboost =1.6.1=pypi_0
xmlschema =1.10.0=pypi_0
xz =5.2.5=h1a28f6b_0
yaml =0.2.5=h1a28f6b_0
zarr =2.6.1=pypi_0
zeromq =4.3.4=hbdafb3b_1
zfp =0.5.5=hc377ac9_6
zict =2.0.0=pyhd3eb1b0_0
zipp =3.6.0=pyhd3eb1b0_0
zlib =1.2.11=h5a0b063_4
zstandard =0.17.0=pypi_0
zstd =1.4.9=h8574219_1