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GitHub / ImmuneDynamics / Spectre
A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ImmuneDynamics%2FSpectre
Stars: 55
Forks: 19
Open Issues: 23
License: mit
Language: HTML
Repo Size: 602 MB
Dependencies:
46
Created: over 3 years ago
Updated: 15 days ago
Last pushed: about 1 month ago
Last synced: 20 days ago
Commit Stats
Commits: 790
Authors: 20
Mean commits per author: 39.5
Development Distribution Score: 0.542
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/ImmuneDynamics/Spectre
Topics: batch-alignment, clustering, computational-analysis, dimensionality-reduction, flow-cytometry, mass-cytometry
Files
Dependencies
- R >= 3.6.0 depends
- Biobase * imports
- BiocManager * imports
- FNN * imports
- FlowSOM * imports
- HDF5Array * imports
- RColorBrewer * imports
- Rtsne * imports
- caret * imports
- class * imports
- colorRamps * imports
- data.table * imports
- devtools * imports
- dplyr * imports
- exactextractr * imports
- factoextra * imports
- flowCore * imports
- flowViz * imports
- ggplot2 * imports
- ggpointdensity * imports
- ggpubr * imports
- ggraph * imports
- ggthemes * imports
- gridExtra * imports
- gtools * imports
- irlba * imports
- pheatmap * imports
- plyr * imports
- qs * imports
- raster * imports
- rgdal * imports
- rgeos * imports
- rhdf5 * imports
- rstudioapi * imports
- rsvd * imports
- s2 * imports
- scales * imports
- sf * imports
- sp * imports
- stars * imports
- stringr * imports
- tidygraph * imports
- tidyr * imports
- tiff * imports
- umap * imports
- rocker/geospatial 4.1.0 build