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GitHub / MetExplore / miom
Constraint-based modeling of metabolism using Mixed Integer Optimization
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MetExplore%2Fmiom
Stars: 11
Forks: 2
Open Issues: 8
License: gpl-3.0
Language: Python
Repo Size: 2.24 MB
Dependencies:
88
Created: almost 3 years ago
Updated: about 1 year ago
Last pushed: about 2 years ago
Last synced: about 1 month ago
Topics: cobrapy, constraint-based-modeling, flux-balance-analysis, genome-scale, metabolism, milp, modeling, optimization, python, reconstruction
Files
Dependencies
- astunparse 1.6.3 develop
- atomicwrites 1.4.0 develop
- attrs 21.2.0 develop
- cached-property 1.5.2 develop
- click 8.0.1 develop
- ghp-import 2.0.1 develop
- iniconfig 1.1.1 develop
- jinja2 3.0.1 develop
- markdown 3.3.4 develop
- markupsafe 2.0.1 develop
- mergedeep 1.3.4 develop
- mkdocs 1.2.2 develop
- mkdocs-autorefs 0.2.1 develop
- mkdocs-material 7.2.5 develop
- mkdocs-material-extensions 1.0.1 develop
- mkdocstrings 0.15.2 develop
- packaging 21.0 develop
- pluggy 0.13.1 develop
- py 1.10.0 develop
- pymdown-extensions 8.2 develop
- pyparsing 2.4.7 develop
- pytest 6.2.4 develop
- pytkdocs 0.11.1 develop
- pyyaml 5.4.1 develop
- pyyaml-env-tag 0.1 develop
- toml 0.10.2 develop
- watchdog 2.1.5 develop
- appdirs 1.4.4
- async-generator 1.10
- certifi 2021.5.30
- cffi 1.14.6
- charset-normalizer 2.0.4
- cobra 0.22.0
- colorama 0.4.4
- commonmark 0.9.1
- contextvars 2.4
- cvxopt 1.2.6
- dataclasses 0.8
- depinfo 1.7.0
- diskcache 5.2.1
- future 0.18.2
- gurobipy 9.1.2
- h11 0.12.0
- httpcore 0.13.3
- httpx 0.19.0
- idna 3.2
- immutables 0.16
- importlib-metadata 4.7.1
- importlib-resources 5.2.2
- mip 1.13.0
- mosek 9.3.3
- mpmath 1.2.1
- numpy 1.19.0
- optlang 1.5.2
- pandas 1.1.5
- picos 2.2.52
- pycparser 2.20
- pydantic 1.8.2
- pygments 2.10.0
- python-dateutil 2.8.2
- python-libsbml 5.19.0
- pytz 2021.1
- rfc3986 1.5.0
- rich 10.7.0
- ruamel.yaml 0.17.14
- ruamel.yaml.clib 0.2.6
- six 1.16.0
- sniffio 1.2.0
- swiglpk 5.0.3
- sympy 1.8
- typing-extensions 3.10.0.0
- zipp 3.5.0