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GitHub / Mr-Milk / SpatialTis
Spatial analysis toolkit for single cell multiplexed tissue data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Mr-Milk%2FSpatialTis
Stars: 29
Forks: 1
Open Issues: 11
License: apache-2.0
Language: Python
Repo Size: 157 MB
Dependencies:
50
Created: over 4 years ago
Updated: 9 days ago
Last pushed: 22 days ago
Last synced: 9 days ago
Commit Stats
Commits: 218
Authors: 6
Mean commits per author: 36.33
Development Distribution Score: 0.647
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/Mr-Milk/SpatialTis
Topics: cell-cell-interaction, heterogeneity, hotspot, imaging-mass-cytometry, multiplexed-ion-beam-imaging, network, single-cell, spaital-analysis, spatial-analysis, spatial-distribution, spatial-omics, tissue
Files
Dependencies
- anndata *
- ipython *
- legendkit *
- leidenalg *
- lightgbm *
- matplotlib *
- milkviz *
- numpy *
- pandas *
- pytest *
- pytest-cov *
- rich *
- scikit-image *
- scipy *
- seaborn *
- anndata *
- leidenalg *
- lightgbm *
- matplotlib *
- nbsphinx *
- nbsphinx_link *
- numpy *
- numpydoc *
- pandas *
- pydata-sphinx-theme *
- pytest *
- pytest-cov *
- python-hmr *
- python-igraph *
- ray *
- rich *
- scikit-image *
- scikit-learn *
- scipy *
- seaborn *
- setuptools *
- sphinx *
- actions/checkout v3 composite
- actions/setup-python v4 composite
- docker/build-push-action v3 composite
- docker/login-action v2 composite
- docker/metadata-action v4 composite
- actions/checkout v3 composite
- docker/build-push-action v3 composite
- docker/login-action v2 composite
- docker/metadata-action v4 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- codecov/codecov-action v3.0.0 composite
- python 3.10 build