GitHub topics: cell-cell-interaction
multitalk/awesome-cell-cell-communication
Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
Language: Jupyter Notebook - Size: 17.6 MB - Last synced at: 2 days ago - Pushed at: 10 days ago - Stars: 45 - Forks: 6
multitalk/miRTalk
Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data
Language: HTML - Size: 77 MB - Last synced at: about 7 hours ago - Pushed at: 11 days ago - Stars: 11 - Forks: 2
jinworks/CellChat
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Language: R - Size: 71.5 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 387 - Forks: 63
multitalk/scCrossTalk
Infer and visualize cell-cell communication for single-cell RNA-seq data
Language: HTML - Size: 50.3 MB - Last synced at: about 7 hours ago - Pushed at: 3 months ago - Stars: 6 - Forks: 1
ZJUFanLab/SpaTalk
Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data
Language: R - Size: 9.83 MB - Last synced at: about 7 hours ago - Pushed at: 3 months ago - Stars: 69 - Forks: 18
ZJUFanLab/CellTalkDB
A manually curated database of literature-supported ligand-receptor interactions in human and mouse
Language: R - Size: 18.5 MB - Last synced at: about 7 hours ago - Pushed at: 10 months ago - Stars: 30 - Forks: 5
theislab/ncem
Learning cell communication from spatial graphs of cells
Language: Python - Size: 40.8 MB - Last synced at: 6 days ago - Pushed at: over 1 year ago - Stars: 109 - Forks: 13
Mengxicici/KateSpaceMap
interactive webpage tool for CODEX cell-cell distance computation in realtime
Language: HTML - Size: 25.2 MB - Last synced at: 2 months ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
zhou-ran/SCAR
Spatially-resolved Chimeric AnalyzeR
Language: R - Size: 104 MB - Last synced at: 24 days ago - Pushed at: 2 months ago - Stars: 0 - Forks: 0
Mmasoud1/HistoJS
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
Language: JavaScript - Size: 290 MB - Last synced at: 4 days ago - Pushed at: about 1 year ago - Stars: 19 - Forks: 0
MihirBafna/clarify
Multi-level Graph Autoencoder (GAE) to clarify cell cell interactions and gene regulatory network inference from spatially resolved transcriptomics
Language: Jupyter Notebook - Size: 131 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 5 - Forks: 0
saeyslab/multinichenetr
MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data
Language: HTML - Size: 686 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 131 - Forks: 14
Mr-Milk/SpatialTis 📦
Spatial analysis toolkit for single cell multiplexed tissue data
Language: Python - Size: 157 MB - Last synced at: 6 days ago - Pushed at: 8 months ago - Stars: 30 - Forks: 1
earmingol/cell2cell
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
Language: Python - Size: 99.7 MB - Last synced at: 24 days ago - Pushed at: 11 months ago - Stars: 59 - Forks: 17
sqjin/CellChat 📦
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
Language: R - Size: 45.4 MB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 637 - Forks: 145
LitingKu/SpaCCI
SpaCCI: Spatially Aware Cell-Cell Interaction Analysis
Language: R - Size: 15.7 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
Ninavd/tumor-dynamics-abm
Project on ABM tumor growth for the Agent-Based Modeling course at the UvA 2023-2024
Language: Python - Size: 19.7 MB - Last synced at: 5 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
Heinyxiao/TumorCrosstalk
A study of the crosstalk between cancer cells and tumor microenvironmental cells.
Language: Jupyter Notebook - Size: 19.2 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
dalodriguez/ExPCom
Differential communication analysis for scRNAseq datasets based on expression products
Language: R - Size: 41.1 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 0 - Forks: 0
pdmoerland/SingleCellNotes
Links to interesting courses, tutorials, papers, software etc. related to single-cell omics data analysis
Size: 114 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 5 - Forks: 1
ZJUFanLab/scDeepTalk
Infer cell-cell communications based on feed-forward neural network
Language: R - Size: 14.4 MB - Last synced at: about 7 hours ago - Pushed at: over 4 years ago - Stars: 3 - Forks: 0
antoineruzette/goo_gallery
Goo is the Blender library for simulating biological cells, tissues and embryos in 3D.
Language: SCSS - Size: 228 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
