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GitHub topics: intercellular-communication

saeyslab/nichenetr

NicheNet: predict active ligand-target links between interacting cells

Language: R - Size: 152 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 534 - Forks: 124

saeyslab/multinichenetr

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

Language: HTML - Size: 686 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 131 - Forks: 14

VCCRI/scTalk

Intercellular communication analysis for scRNA-seq data

Language: R - Size: 5.36 MB - Last synced at: 17 days ago - Pushed at: almost 4 years ago - Stars: 6 - Forks: 1

HeesooSong/Dynamic_NicheNet

(Master's Thesis) Pseudobulk time-course analysis combined with NicheNet to study intercellular communication in time-series single-cell RNA sequencing data

Size: 47.4 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 1

Related Keywords
intercellular-communication 4 ligand-receptor 3 cell-cell-communication 2 ligand-target 2 single-cell 2 single-cell-rna-seq 2 scrna-seq 2 time-series 1 r 1 scrna-seq-analysis 1 systems-biology 1 ligand-receptor-interaction 1 intercellular-signaling 1 differential-expression 1 cell-cell-interaction 1 single-cell-omics 1 rna-seq 1 network-inference 1 gene-expression 1 data-integration 1