Ecosyste.ms: Repos

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GitHub topics: squidpy

scverse/squidpy

Spatial Single Cell Analysis in Python

Language: Python - Size: 9.06 MB - Last synced: 8 days ago - Pushed: 10 days ago - Stars: 397 - Forks: 71

theislab/ncem

Learning cell communication from spatial graphs of cells

Language: Python - Size: 40.8 MB - Last synced: 6 days ago - Pushed: 5 months ago - Stars: 99 - Forks: 13

Nuwa-genomics/Nuwa

A bioinformatics web app for single cell RNA seq analysis.

Language: Python - Size: 431 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

ch1ru/Nuwa

A bioinformatics web app for single cell RNA seq analysis.

Language: Python - Size: 429 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 0 - Forks: 0

karan-nanda/SquidPy

Explore spatial organization of a mouse brain coronal section with Scanpy and Squidpy in this GitHub repository. Analyze cell interactions, visualize distributions, and uncover patterns using various data exploration and spatial analysis techniques.

Language: Jupyter Notebook - Size: 15.5 MB - Last synced: 4 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

Related Keywords
squidpy 5 scanpy 4 bioinformatics 3 spatial-transcriptomics 3 data-science 2 deep-learning 2 streamlit 2 transcriptomics 2 single-cell 1 trajectory-inference 1 web-ui 1 genomics 1 gui 1 scrna-seq 1 webapp 1 coronal 1 dissection 1 tensorflow 1 gnn 1 glm 1 encoder-decoder-model 1 cvae 1 cell-cell-interaction 1 cell-cell-communication 1 spatial-analysis 1 single-cell-rna-seq 1 single-cell-genomics 1 image-analysis 1 data-visualization 1