GitHub topics: multiplexed-imaging-analysis
huBioinfo/CytoCommunity
A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from cell phenotypes.
Language: Python - Size: 202 MB - Last synced at: 14 days ago - Pushed at: 14 days ago - Stars: 21 - Forks: 13
Mmasoud1/HistoJS
HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇
Language: JavaScript - Size: 290 MB - Last synced at: about 4 hours ago - Pushed at: about 1 year ago - Stars: 19 - Forks: 0
anyuzx/HIPPS-DIMES
Maximum Entropy Based HI-C/Distance Map - Polymer Physics - Structures Method
Language: Jupyter Notebook - Size: 15.5 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 12 - Forks: 5
deMirandaLab/PENGUIN_fork Fork of marta-seq/PENGUIN
Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry
Language: Jupyter Notebook - Size: 214 MB - Last synced at: about 2 months ago - Pushed at: 5 months ago - Stars: 3 - Forks: 0
marta-seq/PENGUIN
Rapid and efficient image preprocessing pipeline for multiplexed spatial proteomics. Code to compare several techniques to denoise Imaging Mass cytometry
Language: Jupyter Notebook - Size: 214 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 1
aalokpatwa/rasp-mibi
Computational pipeline for multiplexed analysis of tumors.
Language: Jupyter Notebook - Size: 36 MB - Last synced at: 9 months ago - Pushed at: over 3 years ago - Stars: 8 - Forks: 2
