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GitHub / Oshlack / splatter
Simple simulation of single-cell RNA sequencing data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Oshlack%2Fsplatter
Stars: 205
Forks: 55
Open Issues: 8
License: gpl-3.0
Language: R
Repo Size: 57.1 MB
Dependencies:
54
Created: over 7 years ago
Updated: about 1 month ago
Last pushed: 2 months ago
Last synced: 2 months ago
Commit Stats
Commits: 708
Authors: 26
Mean commits per author: 27.23
Development Distribution Score: 0.234
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/Oshlack/splatter
Topics: bioconductor, bioinformatics, scrna-seq, simulation
Files
Dependencies
- R >= 4.0 depends
- SingleCellExperiment * depends
- BiocGenerics * imports
- BiocParallel * imports
- S4Vectors * imports
- SummarizedExperiment * imports
- checkmate >= 2.0.0 imports
- crayon * imports
- edgeR * imports
- fitdistrplus * imports
- ggplot2 * imports
- grDevices * imports
- locfit * imports
- matrixStats * imports
- methods * imports
- scales * imports
- scater >= 1.15.16 imports
- stats * imports
- utils * imports
- BASiCS >= 1.7.10 suggests
- BiocManager * suggests
- BiocSingular * suggests
- BiocStyle * suggests
- Biostrings * suggests
- GenomeInfoDb * suggests
- GenomicRanges * suggests
- IRanges * suggests
- SparseDC * suggests
- VariantAnnotation * suggests
- covr * suggests
- cowplot * suggests
- igraph * suggests
- knitr * suggests
- limSolve * suggests
- lme4 * suggests
- magick * suggests
- mfa * suggests
- phenopath * suggests
- preprocessCore * suggests
- progress * suggests
- pscl * suggests
- rmarkdown * suggests
- scDD * suggests
- scran * suggests
- scuttle * suggests
- spelling * suggests
- testthat * suggests
- zinbwave * suggests
- JamesIves/github-pages-deploy-action 4.1.4 composite
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite