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GitHub / Qile0317 / APackOfTheClones

Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Qile0317%2FAPackOfTheClones

Stars: 13
Forks: 1
Open Issues: 1

License: other
Language: R
Repo Size: 168 MB
Dependencies: 33

Created: over 1 year ago
Updated: about 1 month ago
Last pushed: about 1 month ago
Last synced: about 1 month ago

Topics: clonal-analysis, immune-repertoire, immune-system, r, scrna-seq, scrnaseq, seurat, single-cell, single-cell-genomics

Files

Readme

Dependencies

.github/workflows/R-CMD-check.yaml actions

actions/checkout v3 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.4.1 composite
actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/test-coverage.yaml actions

actions/checkout v3 composite
actions/upload-artifact v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

DESCRIPTION cran

R >= 3.5.0 depends
Rcpp * imports
Seurat * imports
data.table * imports
dplyr * imports
ggforce * imports
ggplot2 * imports
grDevices * imports
hash * imports
rlang * imports
stats * imports
utils * imports
covr * suggests
knitr * suggests
rmarkdown * suggests
sf * suggests
spelling * suggests
testthat >= 3.0.0 suggests
vdiffr * suggests
xml2 * suggests