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GitHub / aristoteleo / spateo-release
Spatiotemporal modeling of spatial transcriptomics
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aristoteleo%2Fspateo-release
Stars: 145
Forks: 23
Open Issues: 13
License: bsd-2-clause
Language: Python
Repo Size: 32.9 MB
Dependencies:
91
Created: about 3 years ago
Updated: 23 days ago
Last pushed: about 1 month ago
Last synced: 2 days ago
Commit Stats
Commits: 1066
Authors: 18
Mean commits per author: 59.22
Development Distribution Score: 0.699
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/aristoteleo/spateo-release
Topics: 3d-reconstruction, cell-segmentation, spatial-transcriptomics, spatiotemporal
Files
Dependencies
- black ==22.3.0
- bumpversion >=0.6.0
- coverage >=5.1
- cython >=0.29.10
- isort ==5.10.1
- nose >=1.3.7
- numpy >=1.18.1
- pre-commit >=2.4.0
- setuptools >=42
- sphinx >=3.3.1
- sphinx-autoapi >=1.5.1
- sphinx_rtd_theme >=0.5.0
- twine >=2.0.0
- wheel >=0.34.2
- furo >=2020.12.30b24
- gitpython *
- ipython *
- myst-parser *
- nbsphinx *
- nbsphinx-link *
- pandoc *
- scanpydoc >=0.4.5
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- sphinx-autoapi *
- sphinx-autodoc-typehints ==1.17.0
- sphinx-design *
- sphinx-gallery <0.10.1
- sphinx-remove-toctrees *
- sphinx_copybutton *
- sphinx_rtd_theme >=0.3.1
- sphinxext-opengraph *
- typing_extensions *
- POT >=0.8.1
- Shapely >=1.8.0
- anndata >=0.7.4
- colorcet >=2.0.1
- csbdeep >=0.6.3
- cvxopt >=1.2.3
- descartes *
- dynamo-release >=1.0.9
- fbgbp >=0.2.0
- folium >=0.12.1
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- logging-release >=0.0.4
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- ngs_tools >=1.6.0
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- pandas >=0.25.1
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- pynndescent >=0.4.8
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- pyvista >=0.33.3
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- scipy >=1.0
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- tensorflow *
- torch >=1.10.1
- tqdm >=4.62.3
- typing_extensions >=4.0.1
- umap-learn >=0.5.1
- vtk >=9.1.0
- actions/checkout master composite
- actions/setup-python v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/checkout master composite
- actions/checkout v2 composite
- actions/create-release v1.1.2 composite
- actions/setup-python v2 composite
- actions/stale v1 composite