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GitHub / bwh-bioinformatics-hub / nextflow_demo
Demo of a Nextflow Pipeline for bulk-RNA Seq
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bwh-bioinformatics-hub%2Fnextflow_demo
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language: Nextflow
Repo Size: 52.7 KB
Dependencies:
103
Created: about 1 year ago
Updated: about 1 year ago
Last pushed: about 1 year ago
Last synced: about 1 year ago
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Dependencies
env/environment.yml
conda
- _libgcc_mutex 0.1
- _openmp_mutex 5.1
- brotlipy 0.7.0
- bz2file 0.98
- bzip2 1.0.8
- c-ares 1.19.0
- ca-certificates 2023.5.7
- certifi 2023.5.7
- cffi 1.15.0
- charset-normalizer 3.1.0
- click 8.1.3
- coloredlogs 15.0.1
- colormath 3.0.0
- cryptography 3.4.8
- cutadapt 1.18
- cycler 0.11.0
- dbus 1.13.18
- decorator 4.4.2
- expat 2.4.9
- fastqc 0.12.1
- font-ttf-dejavu-sans-mono 2.37
- fontconfig 2.14.1
- freetype 2.12.1
- future 0.18.2
- gdbm 1.18
- glib 2.69.1
- htslib 1.12
- humanfriendly 10.0
- icu 58.2
- idna 3.4
- importlib-metadata 4.11.4
- jinja2 3.1.2
- kiwisolver 1.4.4
- krb5 1.19.4
- ld_impl_linux-64 2.38
- libblas 3.9.0
- libcblas 3.9.0
- libcurl 7.88.1
- libdeflate 1.17
- libedit 3.1.20221030
- libev 4.33
- libffi 3.4.4
- libgcc-ng 11.2.0
- libgfortran-ng 12.2.0
- libgfortran5 12.2.0
- libgomp 11.2.0
- liblapack 3.9.0
- libnghttp2 1.46.0
- libopenblas 0.3.20
- libpng 1.6.39
- libssh2 1.10.0
- libstdcxx-ng 11.2.0
- libuuid 1.41.5
- libxcb 1.15
- libxml2 2.10.3
- lzstring 1.0.4
- markdown 3.4.3
- markdown-it-py 2.2.0
- markupsafe 2.1.1
- matplotlib-base 2.2.4
- mdurl 0.1.0
- multiqc 1.14
- ncurses 6.4
- networkx 2.5.1
- numpy 1.21.6
- openjdk 11.0.13
- openssl 1.1.1t
- pcre 8.45
- perl 5.34.0
- pigz 2.6
- pip 22.3.1
- pycparser 2.21
- pygments 2.15.1
- pyopenssl 20.0.1
- pyparsing 3.0.9
- pysocks 1.7.1
- python 3.7.16
- python-dateutil 2.8.2
- python_abi 3.7
- pytz 2023.3
- pyyaml 6.0
- readline 8.2
- requests 2.29.0
- rich 13.3.5
- rich-click 1.6.1
- setuptools 65.6.3
- simplejson 3.17.6
- six 1.16.0
- spectra 0.0.11
- sqlite 3.41.2
- star 2.7.10b
- stringtie 2.2.1
- tk 8.6.12
- tornado 6.1
- trim-galore 0.6.10
- typing_extensions 4.5.0
- urllib3 1.26.15
- wheel 0.38.4
- xopen 0.7.3
- xz 5.2.10
- yaml 0.2.5
- zipp 3.15.0
- zlib 1.2.13