Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub / chanzuckerberg / cellxgene

An interactive explorer for single-cell transcriptomics data

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/chanzuckerberg%2Fcellxgene

Stars: 579
Forks: 111
Open Issues: 121

License: mit
Language: JavaScript
Repo Size: 239 MB
Dependencies: 1,379

Created: over 6 years ago
Updated: 28 days ago
Last pushed: 28 days ago
Last synced: 28 days ago

Commit Stats

Commits: 1480
Authors: 52
Mean commits per author: 28.46
Development Distribution Score: 0.716
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/chanzuckerberg/cellxgene

Topics: dataviz, scientific, scrna-seq, transcriptomics, visualization

Files

Readme

Dependencies

setup.py pypi

.github/workflows/compatibility_tests.yml actions

actions/cache v1 composite
actions/checkout v2 composite
actions/setup-python v4 composite

.github/workflows/lint-pr-commit-message.yml actions

amannn/action-semantic-pull-request v3.4.1 composite

.github/workflows/push_tests.yml actions

actions/cache v1 composite
actions/checkout v2 composite
actions/setup-python v4 composite
gabrielfalcao/pyenv-action v9 composite

Dockerfile docker

ubuntu bionic build

.github/workflows/codeql-analysis.yml actions

actions/checkout v2 composite
github/codeql-action/analyze v1 composite
github/codeql-action/autobuild v1 composite
github/codeql-action/init v1 composite

client/package.json npm

@babel/core ^7.13.16 development
@babel/plugin-proposal-class-properties ^7.10.4 development
@babel/plugin-proposal-decorators ^7.13.15 development
@babel/plugin-proposal-export-namespace-from ^7.10.4 development
@babel/plugin-proposal-function-bind ^7.10.5 development
@babel/plugin-proposal-nullish-coalescing-operator ^7.10.4 development
@babel/plugin-proposal-optional-chaining ^7.10.4 development
@babel/plugin-transform-react-constant-elements ^7.13.13 development
@babel/plugin-transform-runtime ^7.13.15 development
@babel/preset-env ^7.13.15 development
@babel/preset-react ^7.13.13 development
@babel/register ^7.13.16 development
@babel/runtime ^7.13.16 development
@blueprintjs/eslint-plugin ^0.3.0 development
@sentry/webpack-plugin ^1.15.0 development
babel-jest ^26.1.0 development
babel-loader ^8.1.0 development
babel-preset-modern-browsers ^15.0.2 development
chalk ^4.1.0 development
cheerio ^1.0.0-rc.6 development
clean-css ^5.1.2 development
clean-webpack-plugin ^4.0.0-alpha.0 development
codecov ^3.7.1 development
css-loader ^5.2.4 development
css-minimizer-webpack-plugin ^4.0.0 development
eslint ^7.24.0 development
eslint-config-airbnb ^18.2.0 development
eslint-config-prettier ^8.2.0 development
eslint-plugin-compat ^3.8.0 development
eslint-plugin-eslint-comments ^3.2.0 development
eslint-plugin-filenames ^1.3.2 development
eslint-plugin-import ^2.24.2 development
eslint-plugin-jest ^24.3.5 development
eslint-plugin-jsx-a11y ^6.3.1 development
eslint-plugin-react ^7.23.2 development
eslint-plugin-react-hooks ^4.0.8 development
expect-puppeteer ^5.0.0 development
express ^4.17.1 development
file-loader ^6.0.0 development
html-webpack-plugin ^5.3.1 development
husky ^7.0.2 development
jest ^27.0.6 development
jest-circus ^27.0.6 development
jest-environment-puppeteer ^5.0.1 development
jest-fetch-mock ^3.0.3 development
jest-puppeteer ^5.0.1 development
json-loader ^0.5.7 development
lint-staged ^10.2.11 development
lodash ^4.17.21 development
lodash.every ^4.6.0 development
lodash.filter ^4.6.0 development
lodash.isnumber ^3.0.3 development
lodash.map ^4.6.0 development
lodash.zip ^4.2.0 development
mini-css-extract-plugin ^1.5.0 development
obsolete-webpack-plugin ^0.5.6 development
prettier ^2.0.5 development
puppeteer ^8.0.0 development
rimraf ^3.0.2 development
serve-favicon ^2.5.0 development
terser-webpack-plugin ^5.1.1 development
webpack ^5.34.0 development
webpack-cli ^4.6.0 development
webpack-dev-middleware ^4.1.0 development
webpack-merge ^5.0.9 development
@babel/eslint-parser ^7.15.0
@blueprintjs/core ^3.44.0
@blueprintjs/icons ^3.19.0
@blueprintjs/popover2 ^0.11.2
@blueprintjs/select ^3.16.0
abort-controller ^3.0.0
core-js ^3.16.3
d3 ^4.10.0
d3-scale-chromatic ^1.5.0
flatbuffers ^1.11.0
fuzzysort ^1.1.4
gl-mat4 ^1.2.0
gl-matrix ^3.3.0
gl-vec3 ^1.1.3
is-number ^7.0.0
lodash.clonedeep ^4.5.0
lodash.difference ^4.5.0
lodash.foreach ^4.5.0
lodash.pull ^4.1.0
lodash.sortby ^4.7.0
lodash.uniq ^4.5.0
memoize-one ^5.1.1
pako ^2.0.3
react ^17.0.2
react-async ^10.0.1
react-dom ^17.0.2
react-flip-toolkit ^7.0.12
react-helmet ^6.1.0
react-icons ^4.2.0
react-redux ^7.2.0
redux ^4.0.5
redux-thunk ^2.3.0
regenerator-runtime ^0.13.7
regl ^2.1.0
sha1 ^1.1.1
tinyqueue ^2.0.3
whatwg-fetch ^3.2.0

.github/workflows/close-stale-prs.yml actions

actions/stale v5 composite

pyproject.toml pypi

requirements.txt pypi

server/requirements-annotate.txt pypi

mlflow *
scanpy *

server/requirements-dev.txt pypi

black * development
bumpversion >=0.5 development
codecov >=2.0.15 development
parameterized >=0.7.0 development
pytest >=3.6.3 development
python-jose >=3.2.0 development
twine >=1.12.1 development

server/requirements-prepare.txt pypi

louvain >=0.6
python-igraph >=0.8
scanpy *
umap-learn <0.5.0

server/requirements.txt pypi

Flask >=1.0.2,<2.3.0
Flask-Compress >=1.4.0
Flask-Cors >=3.0.9
Flask-RESTful >=0.3.6
PyYAML >=5.4
anndata >=0.7.6
boto3 >=1.12.18
click >=7.1.2
flask-server-timing >=0.1.2
flask-talisman >=0.7.0
flatbuffers >=1.11.0,<2.0.0
flatten-dict >=0.2.0
fsspec >=0.4.4,<0.8.0
gunicorn >=20.0.4
h5py >=3.0.0
numba >=0.51.2
numpy >=1.17.5,<=1.22
packaging >=20.0
requests >=2.22.0
s3fs ==0.4.2
scipy >=1.4

client/package-lock.json npm

1229 dependencies