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GitHub / czbiohub-sf / orpheum

Orpheum (Previously called and published under sencha) is a Python package for directly translating RNA-seq reads into coding protein sequence.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/czbiohub-sf%2Forpheum

Stars: 18
Forks: 4
Open Issues: 38

License: mit
Language: Python
Repo Size: 68.9 MB
Dependencies: 85

Created: about 5 years ago
Updated: 12 months ago
Last pushed: over 1 year ago
Last synced: 12 days ago

Files

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Dependencies

conda_requirements.txt pypi

environment.yml pypi

autopep8 ==1.4.4
bz2file ==0.98
click ==6.7
docopt ==0.6.2
httmock ==1.3.0
khmer ==2.1.1
matplotlib ==2.2.2
pip ==10.0.1
pipreqs ==0.4.9
screed ==1.0
yapf ==0.28.0
yarg ==0.1.9

requirements.txt pypi

requirements_minimal.txt pypi

requirements_testing.txt pypi

black * test
coverage * test
flake8 * test
pytest * test
pytest-cov * test

requirements_with_versions.txt pypi

click ==6.7
fastcluster ==1.1.25
httmock ==1.3.0
ipykernel ==5.1.2
joblib ==0.14.0
khmer ==3.0.0a3
matplotlib ==3.1.1
networkx ==2.3
notebook ==5.5.0
numpy ==1.18.1
pandas ==0.25.1
polo ==0.5
pytest ==3.9.1
requests ==2.22.0
s3fs ==0.2.2
scikit_learn ==0.22.2.post1
scipy ==1.3.1
screed ==1.0.4
seaborn ==0.9.0
setuptools ==39.1.0
sourmash ==3.2.2
sourmash.egg ==info
tqdm ==4.31.1