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GitHub / foerstner-lab / READemption
A pipeline for the computational evaluation of RNA-Seq data
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/foerstner-lab%2FREADemption
Stars: 35
Forks: 19
Open Issues: 21
License: other
Language: Python
Repo Size: 295 MB
Dependencies:
16
Created: about 10 years ago
Updated: 4 months ago
Last pushed: 2 months ago
Last synced: 4 days ago
Topics: bioinformatics, rna-seq
Files
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Readme
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Dependencies
.github/workflows/main.yml
actions
- actions/checkout v2 composite
- actions/setup-python v2 composite
- conda-incubator/setup-miniconda v2 composite
Dockerfile
docker
- ubuntu 22.04 build
- biopython >=1.79
- matplotlib >=3.5.2
- pandas >=1.4.3
- pysam >=0.19.1
- seaborn >=0.11.2
- sphinx-argparse >=0.2.5
setup.py
pypi
- biopython *
- matplotlib *
- pandas *
- pysam *
- seaborn *
- sphinx-argparse *