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GitHub / frankvogt / vcf2gwas
Python API for comprehensive GWAS analysis using GEMMA
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/frankvogt%2Fvcf2gwas
Stars: 63
Forks: 25
Open Issues: 13
License: gpl-3.0
Language: Python
Repo Size: 27 MB
Dependencies:
14
Created: about 3 years ago
Updated: 7 months ago
Last pushed: 9 months ago
Last synced: 7 months ago
Topics: gemma-analysis, gwas, vcf
Files
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Readme
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Dependencies
vcf2gwas/environment.yml
conda
- adjusttext 0.7.*
- bcftools 1.12.*
- gemma 0.98.3.*
- ipykernel
- matplotlib 3.4.*
- numpy 1.20.*
- pandas 1.2.*
- pip
- plink 1.90.*
- psutil 5.8.*
- python 3.9.*
- scikit-allel 1.3.*
- scikit-learn 0.24.*
- seaborn 0.11.*