Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: plink
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/plink
Dependent Repos 28
johsr/gwas-regenie Fork of genepi/nf-gwas
A nextflow pipeline to perform whole genome regression modelling using regenie.- 1.90b6.21.* environment.yml
Size: 43.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
CVandiedonck/T1D_GWAS_long_version
- 1.90b6.12.* binder/environment.yml
Size: 16.4 MB - Last synced: 9 months ago - Pushed: 9 months ago
stschiff/exp_dat_reading_group_2021
Public Repository of our Fall 2021 Reading group on PCA, STRUCTURE and other means of low-dimensional representation of genetic data- 1.90b6.21.* environment.yml
Size: 13.9 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
admixVIE/iNEAL
Introduction to Neanderthal palaeogenomic analyses for non-geneticists- environment.yml
Size: 169 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
lifebit-ai/gel-gwas-nf
- environment.yml
Size: 3.49 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
lifebit-ai/relate
Genomics Englands' Ancestry and Relatedness inference workflow- 1.90b6.12.* environment.yml
Size: 718 KB - Last synced: about 1 month ago - Pushed: about 1 year ago
lifebit-ai/siteqc
Genomics England's workflow for variant annotation and quality control.- 1.90b6.12.* environment.yml
Size: 242 KB - Last synced: about 1 month ago - Pushed: over 3 years ago
lifebit-ai/annotate
- 1.90b6.12.* environment.yml
Size: 164 KB - Last synced: about 1 month ago - Pushed: over 3 years ago
xyg123/SNP_enrich_preprocess
Preprocessing for SNP tissue enrichment analysis methods- environment.yaml
Size: 6.09 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
lifebit-ai/phewas
Performs a PheWAS analysis & generates a Manhattan plot using the PheWAS R package- environment.yml
Size: 6.78 MB - Last synced: about 1 month ago - Pushed: about 1 year ago
sgavril/Nugen-Pilot-Analysis
- 1.90b6.18.* environment.yml
Size: 68.8 MB - Last synced: 10 months ago - Pushed: over 1 year ago
lifebit-ai/gwas
GWAS pipeline using SAIGE- environment.yml
Size: 37.4 MB - Last synced: about 1 month ago - Pushed: about 1 year ago
omicsclass/biodocker
docker images for bioinformatics- 1.90b6.12.* pop-evol-gwas/environment.yml
- reseq/environment.yml
Size: 59.2 MB - Last synced: 12 months ago - Pushed: over 1 year ago
cvraut/UKB_500K_exome_QC
Some scripts to run QC on the UK Biobank 500k exome data- 1.90b6.21 environment.yml
Size: 1.05 MB - Last synced: 12 months ago - Pushed: 12 months ago
cokelaer/bioconvert Fork of bioconvert/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.- environment.yml
Size: 19.9 MB - Last synced: 2 months ago - Pushed: 10 months ago
NIH-NICHD/plink-docker
containerizing plink- environment.yml
Size: 27.3 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
NCI-CGR/plco-analysis
Primary workflow for the PLCO "Atlas" project- environment.yaml
Size: 3.58 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
ekirving/ms_paper
Source code from the paper: "Elevated Genetic Risk for Multiple Sclerosis Originated in Steppe Pastoralist Populations." (2022) bioRxiv- 1.90b6.21.* environment.yaml
Size: 3.42 MB - Last synced: 2 months ago - Pushed: 10 months ago
cnrgh/LodSeq
LodSeq performs the genetic linkage analysis across families, by computing lod-scores given a gvcf file and a related tfam pedigree file- environment.yaml
Last synced: over 1 year ago
elarsonneur/LodSeq
LodSeq performs the genetic linkage analysis across families, by computing lod-scores given a gvcf file and a related tfam pedigree file- environment.yaml
Last synced: over 1 year ago
frankvogt/vcf2gwas
Python API for comprehensive GWAS analysis using GEMMA- 1.90.* vcf2gwas/environment.yml
Size: 27 MB - Last synced: 7 months ago - Pushed: 9 months ago
hclimente/gwas-tools
🧬 Containerized pipelines for GWAS- environment.yml
Size: 230 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
cokelaer/sequana_bioconvert Fork of sequana/bioconvert
convert files from one format to another using bioconvert- environment.yml
Size: 627 KB - Last synced: 2 months ago - Pushed: 5 months ago
victor-moreno/ImputationTutorial
Tutorial on preparing SNP data for imputation using Binder- environment.yml
Size: 2.56 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
bfairkun/Comparative_eQTL
Primary data: Chimp eQTLs called from heart tissue samples- 1.90b4 code/snakemake_workflow/envs/environment.yml
Size: 583 MB - Last synced: 9 months ago - Pushed: over 3 years ago
YangLabHKUST/XPXP
- 1.* environment.yml
Size: 1.02 MB - Last synced: 10 months ago - Pushed: almost 2 years ago
casperch/snakemake-wrappers
snakemake-wrappers- 1.90b6.12 bio/plink/environment.yaml
Size: 119 MB - Last synced: about 1 month ago - Pushed: almost 4 years ago
mikegloudemans/colocalization-ensemble-pipeline
Colocalization analysis of GWAS and eQTL loci in brain tissues.- snakemake/environment.yml
Size: 506 KB - Last synced: about 1 year ago - Pushed: over 2 years ago
shaneknapp/datahub Fork of berkeley-dsep-infra/datahub
JupyterHubs for use by Berkeley enrolled students- 1.90b6.21.* deployments/biology/image/environment.yml
Size: 71.4 MB - Last synced: about 20 hours ago - Pushed: about 20 hours ago
NPogo/scalepopgen_v3 Fork of BioInf2305/scalepopgen_v3
- 1.90b6.21.* environment.yml
Size: 58.1 MB - Last synced: 8 months ago - Pushed: 8 months ago
ryanlovett/datahub Fork of berkeley-dsep-infra/datahub
JupyterHubs for use by Berkeley enrolled students- 1.90b6.21.* deployments/biology/image/environment.yml
Size: 71.5 MB - Last synced: 1 day ago - Pushed: 1 day ago
berkeley-dsep-infra/datahub
JupyterHubs for use by Berkeley enrolled students- 1.90b6.21.* deployments/biology/image/environment.yml
Size: 71.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
insitro/EmbedGEM
EmbedGEM: A framework to evaluate the utility of embeddings for genetic discovery- 1.90b6.21.* workflow/environment.yml
Size: 149 KB - Last synced: 6 months ago - Pushed: 6 months ago
unicorn-23/GwasWA
- 1.90b6.21 environment.yml
Size: 75.5 MB - Last synced: 5 months ago - Pushed: 5 months ago
bioconvert/bioconvert
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.- environment.yml
Size: 19.9 MB - Last synced: 4 days ago - Pushed: 6 months ago
cnr-ibba/SMARTER-database
Smarter database repository- 1.90b6.18.* environment.yml
Size: 1.43 MB - Last synced: 1 day ago - Pushed: 1 day ago
acpuchades/hub-roche
- 1.90b6.21 environment.yml
Size: 27.3 KB - Last synced: 3 days ago - Pushed: 4 days ago
urmovosa/ldoverlapnf
Pipeline for identifying novel GWAS hits from GWAS results- environment.yml
Size: 31.3 KB - Last synced: about 1 month ago - Pushed: 2 months ago
nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!- 1.90b6.21.* modules/nf-core/plink/bcf/environment.yml
- 1.90b6.21.* modules/nf-core/plink/exclude/environment.yml
- 1.90b6.21.* modules/nf-core/plink/extract/environment.yml
- 1.90b6.21.* modules/nf-core/plink/gwas/environment.yml
- 1.90b6.21.* modules/nf-core/plink/hwe/environment.yml
- 1.90b6.21.* modules/nf-core/plink/indep/environment.yml
- 1.90b6.21.* modules/nf-core/plink/indeppairwise/environment.yml
- 1.90b6.21.* modules/nf-core/plink/ld/environment.yml
- 1.90b6.21.* modules/nf-core/plink/recode/environment.yml
- 1.90b6.21.* modules/nf-core/plink/vcf/environment.yml
Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
Jianhua-Wang/easyfinemap
user-friendly pipeline for GWAS fine-mapping- 1.90b6.21 environment.yml
Size: 50.6 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
Popgen48/scalepopgen
- 1.90b6.12 modules/local/plink/calc_1_min_ibs_dist/environment.yml
- 1.90b6.12 modules/local/plink/calc_maf/environment.yml
- 1.90b6.12 modules/local/plink/environment.yml
- 1.90b6.12 modules/local/plink/make_bed/environment.yml
Size: 2.33 MB - Last synced: 29 days ago - Pushed: about 2 months ago
