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GitHub / fursham-h / factR
factR: Functional Annotation of Custom-assembled Transcripts in R
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/fursham-h%2FfactR
Stars: 1
Forks: 0
Open Issues: 0
License: apache-2.0
Language: R
Repo Size: 12.6 MB
Dependencies:
53
Created: over 4 years ago
Updated: over 1 year ago
Last pushed: 10 months ago
Last synced: about 16 hours ago
Topics: custom-transcriptomes, functional-annotation, gtf, rna-seq-analysis
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Dependencies
DESCRIPTION
cran
- R >= 4.2 depends
- BiocGenerics >= 0.38 imports
- BiocParallel imports
- Biostrings >= 2.60 imports
- GenomeInfoDb >= 1.28 imports
- GenomicFeatures >= 1.44 imports
- GenomicRanges >= 1.44 imports
- IRanges >= 2.26 imports
- RCurl >= 1.98 imports
- S4Vectors >= 0.30 imports
- XML >= 3.99 imports
- crayon * imports
- data.table >= 1.14 imports
- dplyr >= 1.0 imports
- drawProteins >= 1.12 imports
- ggplot2 >= 3.3 imports
- graphics >= 4.1 imports
- methods >= 4.0 imports
- pbapply >= 1.5 imports
- purrr >= 0.3 imports
- rlang >= 1.0 imports
- rtracklayer >= 1.52 imports
- stats >= 4.1 imports
- stringr >= 1.4 imports
- tibble >= 3.1 imports
- tidyr >= 1.1 imports
- utils >= 4.1 imports
- wiggleplotr >= 1.16 imports
- AnnotationHub >= 2.22 suggests
- BSgenome >= 1.58 suggests
- BSgenome.Mmusculus.UCSC.mm10 * suggests
- bio3d >= 2.4 suggests
- covr * suggests
- knitr * suggests
- markdown * suggests
- patchwork * suggests
- rmarkdown * suggests
- rmdformats * suggests
- signalHsmm >= 1.5 suggests
- testthat * suggests
- tidyverse >= 1.3 suggests
- zeallot * suggests
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite
.github/workflows/pkgdown.yaml
actions
- actions/cache v2 composite
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite
- actions/cache v2 composite
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite