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GitHub / hiyama341 / teemi

teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hiyama341%2Fteemi

Stars: 32
Forks: 3
Open Issues: 7

License: mit
Language: Jupyter Notebook
Repo Size: 97.9 MB
Dependencies: 27

Created: over 1 year ago
Updated: 2 months ago
Last pushed: about 1 month ago
Last synced: 6 days ago

Commit Stats

Commits: 49
Authors: 2
Mean commits per author: 24.5
Development Distribution Score: 0.02
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/hiyama341/teemi

Topics: bio-cad, ht-strain-construction, machine-learning-guided-engineering-of-biology, metabolic-engineering, synthetic-biology

Files

Readme

Dependencies

.github/workflows/main.yml actions

actions/checkout v3 composite
actions/checkout v2 composite
actions/setup-python v4 composite
codecov/codecov-action v3 composite
pypa/gh-action-pypi-publish v1.5.0 composite

requirements.txt pypi

benchlingapi >=2.1.12
biopython >=1.79
intermine >=1.12.0
matplotlib >=3.5.1
nbsphinx ==0.8.9
numpy >=1.21.0
openpyxl >=3.0.9
pandas >=1.3.0
pydna >=4.0.7
pytest-cov ==3.0.0
python-dotenv >=0.20.0
wheel >=0.37.1

setup.py pypi

benchlingapi >=2.1.12
biopython >=1.79
intermine >=1.12.0
matplotlib >=3.5.1
numpy >=1.21.0
openpyxl >=3.0.9
pandas >=1.3.0
pydna >=4.0.7
python-dotenv >=0.20.0
wheel >=0.37.1