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GitHub / huangyh09 / brie
BRIE: Bayesian Regression for Isoform Estimate in Single Cells
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/huangyh09%2Fbrie
Stars: 40
Forks: 15
Open Issues: 25
License: apache-2.0
Language: Python
Repo Size: 1.72 MB
Dependencies:
25
Created: over 7 years ago
Updated: 17 days ago
Last pushed: 17 days ago
Last synced: 16 days ago
Topics: alternative-splicing, differential-momentum-gene, differential-splicing, isoform-quantification, rna-seq, single-cell, variantional-inference
Files
Dependencies
- brie *
- importlib_metadata *
- ipykernel *
- nbsphinx <=0.8.6
- setuptools *
- setuptools_scm *
- sphinx >=1.7
- sphinx_autodoc_typehints <=1.6
- sphinx_rtd_theme >=0.3
- typing_extensions *
- anndata >=0.6
- click >=7.0.0
- h5py >=2.9.0
- matplotlib >=3.1.2
- numpy >=1.18.0
- pandas >=0.23.0
- pysam >=0.15.2
- scanpy >=1.5
- scikit-learn >=0.23
- scipy >=1.4.1
- seaborn >=0.10.0
- statsmodels >=0.11
- tensorflow >=2.0.0
- tensorflow-probability >=0.8.0