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GitHub / idolawoye / BAGEP
A pipeline for Bacterial Whole genome sequence data analysis
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/idolawoye%2FBAGEP
Stars: 10
Forks: 1
Open Issues: 2
License: mit
Language: Python
Repo Size: 3.14 MB
Dependencies:
12
Created: almost 6 years ago
Updated: about 1 year ago
Last pushed: almost 2 years ago
Last synced: 8 months ago
Topics: pipeline, tb, tuberculosis, wgs, workflow
Files
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Readme
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Dependencies
environment.yml
conda
- abricate
- centrifuge
- fastp
- iqtree
- krona
- pandoc
- python 3.6.*
- r-argparse
- r-heatmaply
- r-vcfr
- snakemake 6.12.1.*
- snippy 4.6.0.*