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GitHub / instadeepai / FrameDiPT

FrameDiPT: an SE(3) diffusion model for protein structure inpainting

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/instadeepai%2FFrameDiPT

Stars: 22
Forks: 2
Open Issues: 0

License: other
Language: Jupyter Notebook
Repo Size: 42.4 MB
Dependencies: 310

Created: 6 months ago
Updated: 4 months ago
Last pushed: 4 months ago
Last synced: 4 months ago

Topics: alphafold2, diffusion-models, generative-model, inpainting, loop-design, protein-folding, protein-structure, tcr

Files

Readme

Dependencies

Dockerfile docker

mambaorg/micromamba 1.4.2 build

pyproject.toml pypi

requirements.txt pypi

antlr4-python3-runtime ==4.9.3
biopython ==1.81
black ==22.3.0
blessed ==1.20.0
click ==8.1.3
contextlib2 ==21.6.0
deepspeed ==0.8.0
docker-pycreds ==0.4.0
fair-esm ==2.0.0
gitdb ==4.0.10
gitpython ==3.1.30
gpustat ==1.0.0
gputil ==1.4.0
hjson ==3.1.0
hydra-core ==1.3.1
hydra-joblib-launcher ==1.2.0
isort ==5.12.0
joblib ==1.2.0
ml-collections ==0.1.1
mypy ==0.991
neptune ==1.1.1
ninja ==1.11.1
numpy ==1.22.4
nvidia-ml-py ==11.495.46
omegaconf ==2.3.0
pathtools ==0.1.2
pre-commit ==2.19.0
protobuf ==4.21.12
py-cpuinfo ==9.0.0
pydantic ==1.10.4
pytest ==7.3.1
pytest-cov ==4.0.0
pytest-mock ==3.11.1
pytest-xdist ==3.2.1
ruff ==0.0.231
s3fs ==2023.1.0
scikit-learn ==1.2.1
sentry-sdk ==1.15.0
setproctitle ==1.3.2
smmap ==5.0.0
threadpoolctl ==3.1.0
tmtools ==0.0.2
tqdm ==4.64.1
types-tqdm ==4.65.0.1

setup.py pypi

environment.yml conda

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