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GitHub / jvrana / pyblast
BLAST wrapper for python that handles circular sequences
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/jvrana%2Fpyblast
Stars: 0
Forks: 0
Open Issues: 4
License: mit
Language: Python
Repo Size: 137 MB
Dependencies:
122
Created: almost 7 years ago
Updated: over 1 year ago
Last pushed: over 3 years ago
Last synced: over 1 year ago
Topics: biology, blast, dna, dna-assembly, dna-sequences
Files
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Readme
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Dependencies
- actions/cache v1 composite
- actions/checkout v1 composite
- actions/setup-python v1 composite
- toolmantim/release-drafter v5.2.0 composite
Dockerfile
docker
- jvrana/blastdocker latest build
pyproject.toml
pypi
- numpy ^1.17 develop
- pytest ^4.6 develop
- biopython ^1.73
- black ^19.3b0
- coveralls ^1.8
- fire ^0.3
- loggable-jdv ^0.1.4
- nbsphinx ^0.4.3
- networkx ^2.4
- pandoc ^1.0
- pre-commit ^1.17
- pylint ^2.3
- pytest-cov ^2.7
- python ^3.6
- recommonmark ^0.6.0
- sphinx ^2.2
- sphinx-bootstrap-theme ^0.7.1
- sphinx_autodoc_typehints ^1.8
- termcolor ^1.1
- tox ^3.13
- tox-conda ^0.2.0
poetry.lock
pypi
- alabaster 0.7.12
- appdirs 1.4.4
- arrow 0.14.7
- aspy.yaml 1.3.0
- astroid 2.4.2
- atomicwrites 1.4.0
- attrs 19.3.0
- babel 2.8.0
- biopython 1.77
- black 19.10b0
- bleach 3.1.5
- certifi 2020.6.20
- cfgv 3.0.0
- chardet 3.0.4
- click 7.1.2
- colorama 0.4.3
- colorlog 4.2.1
- commonmark 0.9.1
- coverage 5.2.1
- coveralls 1.11.1
- decorator 4.4.2
- defusedxml 0.6.0
- distlib 0.3.1
- docopt 0.6.2
- docutils 0.16
- entrypoints 0.3
- filelock 3.0.12
- fire 0.3.1
- identify 1.4.25
- idna 2.10
- imagesize 1.2.0
- importlib-metadata 1.7.0
- importlib-resources 3.0.0
- ipython-genutils 0.2.0
- isort 4.3.21
- jinja2 2.11.2
- jsonschema 3.2.0
- jupyter-core 4.6.3
- lazy-object-proxy 1.4.3
- loggable-jdv 0.1.7
- markupsafe 1.1.1
- mccabe 0.6.1
- mistune 0.8.4
- more-itertools 8.4.0
- nbconvert 5.6.1
- nbformat 5.0.7
- nbsphinx 0.4.3
- networkx 2.4
- nodeenv 1.4.0
- numpy 1.19.1
- packaging 20.4
- pandoc 1.0.2
- pandocfilters 1.4.2
- pathspec 0.8.0
- pluggy 0.13.1
- ply 3.11
- pre-commit 1.21.0
- py 1.9.0
- pygments 2.6.1
- pylint 2.5.3
- pyparsing 2.4.7
- pyrsistent 0.16.0
- pytest 4.6.11
- pytest-cov 2.10.0
- python-dateutil 2.8.1
- pytz 2020.1
- pywin32 228
- pyyaml 5.3.1
- recommonmark 0.6.0
- regex 2020.7.14
- requests 2.24.0
- six 1.15.0
- snowballstemmer 2.0.0
- sphinx 2.4.4
- sphinx-autodoc-typehints 1.10.3
- sphinx-bootstrap-theme 0.7.1
- sphinxcontrib-applehelp 1.0.2
- sphinxcontrib-devhelp 1.0.2
- sphinxcontrib-htmlhelp 1.0.3
- sphinxcontrib-jsmath 1.0.1
- sphinxcontrib-qthelp 1.0.3
- sphinxcontrib-serializinghtml 1.1.4
- termcolor 1.1.0
- testpath 0.4.4
- toml 0.10.1
- tox 3.18.1
- tox-conda 0.2.1
- tqdm 4.48.0
- traitlets 4.3.3
- typed-ast 1.4.1
- urllib3 1.25.10
- virtualenv 20.0.28
- wcwidth 0.2.5
- webencodings 0.5.1
- wrapt 1.12.1
- zipp 3.1.0