Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / katerinakazantseva / stRainy
Graph-based assembly phasing
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/katerinakazantseva%2FstRainy
Stars: 40
Forks: 5
Open Issues: 10
License: other
Language: Python
Repo Size: 16.8 MB
Dependencies:
25
Created: over 2 years ago
Updated: about 1 month ago
Last pushed: about 1 month ago
Last synced: about 1 month ago
Topics: assembly, hifi, long-read-sequencing, long-reads, metagenomic-analysis, metagenomics, nanopore, sequencing
Files
Loading...
Readme
Loading...
Dependencies
requirements.txt
pypi
- Bio *
- gfapy *
- karateclub *
- matplotlib *
- more_itertools *
- networkx *
- numpy *
- pandas *
- pygraphviz *
- pysam *
environment.yml
conda
- bcftools >=1.14
- biopython
- gfapy
- karateclub
- matplotlib
- minimap2
- networkx >=2.6
- numpy
- pandas
- pygraphviz
- pysam
- python >=3.8
- python-edlib
- samtools >=1.14
- scipy >=1.8