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GitHub / lqsae / toil

A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/lqsae%2Ftoil

Fork of DataBiosphere/toil
Stars: 0
Forks: 0
Open Issues: 0

License: apache-2.0
Language:
Repo Size: 28.8 MB
Dependencies: 70

Created: almost 2 years ago
Updated: almost 2 years ago
Last pushed: almost 2 years ago
Last synced: about 2 months ago

Files

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Readme

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Dependencies

.github/workflows/codeql-analysis.yml actions

actions/checkout v2 composite
github/codeql-action/analyze v1 composite
github/codeql-action/autobuild v1 composite
github/codeql-action/init v1 composite

dashboard/grafana/Dockerfile docker

grafana/grafana latest build

dashboard/mtail/Dockerfile docker

jinnlynn/mtail latest build

dashboard/prometheus/Dockerfile docker

prom/prometheus v2.24.1 build

docs/running/server/docker-compose.yml docker

${TOIL_APPLIANCE_SELF} latest
rabbitmq 3.9.5
traefik v2.2

requirements-aws.txt pypi

boto >=2.48.0,<3
boto3 >=1.20.46,<2
boto3-stubs ==1.24.0
mypy-boto3-iam ==1.24.0
mypy-boto3-s3 ==1.24.0
mypy-boto3-sdb ==1.24.0

requirements-cwl.txt pypi

cwltool ==3.1.20220628170238
galaxy-tool-util *
networkx >=2,<2.8.5
ruamel.yaml >=0.15,<=0.17.21
ruamel.yaml.clib >=0.2.6

requirements-dev.txt pypi

autoflake * development
black * development
cwltest >=2.2.20211116163652 development
diff_cover * development
docutils >=0.16,<0.18 development
flake8 >=3.8.4,<5 development
flake8-bugbear >=20.11.1,<21 development
isort * development
lxml * development
mock >=4.0.3,<5 development
mypy ==0.960 development
pydocstyle * development
pytest >=6.2.1,<8 development
pytest-cov >=2.12.1,<4 development
pytest-timeout >=1.4.2,<3 development
pyupgrade * development
setuptools >=51.3.3,<63 development
sphinx >=4,<6 development
stubserver >=1.1,<2 development
types-boto * development
types-pytz * development
types-requests * development
types-setuptools * development

requirements-encryption.txt pypi

pynacl >=1.4.0,<2

requirements-google.txt pypi

apache-libcloud >=2.2.1,<3
google-cloud-storage >=1.6.0,<2

requirements-htcondor.txt pypi

htcondor >=8.6.0,<9

requirements-kubernetes.txt pypi

idna >=2
kubernetes >=12.0.1,<22

requirements-mesos.txt pypi

pymesos >=0.3.15,<0.4

requirements-server.txt pypi

celery >=5.1.0,<6
connexion >=2.10.0,<3
flask >=2.0,<3
flask-cors ==3.0.10
gunicorn ==20.1.0
ruamel.yaml >=0.15,<0.17.22
werkzeug >=2.0,<3
wes-service >=4.0.0,<5

requirements-wdl.txt pypi

wdlparse ==0.1.0

requirements.txt pypi

addict >=2.2.1,<2.5
dill >=0.3.2,<0.4
docker >=3.7.2,<6
enlighten >=1.5.2,<2
psutil >=3.0.1,<6
py-tes >=0.4.2,<1
python-dateutil *
pytz >=2012
requests >=2,<3
typing-extensions *