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GitHub / microsud / microbiomeutilities
The is mostly a wrapper tool using phyloseq and microbiome R packages.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/microsud%2Fmicrobiomeutilities
Stars: 31
Forks: 6
Open Issues: 7
License: other
Language: R
Repo Size: 40 MB
Dependencies:
32
Created: over 6 years ago
Updated: 9 months ago
Last pushed: over 1 year ago
Last synced: 7 months ago
Topics: 16s, amplicon, core-microbiome, metagenomics, microbial-communities, microbiome, microbiome-analysis, qc-pipeline, sequencing
Files
Dependencies
- R >= 3.6.0 depends
- dplyr * depends
- ggplot2 * depends
- microbiome * depends
- phyloseq * depends
- Biostrings * imports
- RColorBrewer * imports
- data.table * imports
- gghalves * imports
- ggpubr * imports
- ggrepel * imports
- methods * imports
- pheatmap * imports
- plyr * imports
- reshape2 * imports
- scales * imports
- stats * imports
- tibble * imports
- tidyr * imports
- utils * imports
- vegan * imports
- BiocGenerics * suggests
- ape * suggests
- knitr * suggests
- patchwork * suggests
- rmarkdown * suggests
- viridis * suggests
- actions/cache v1 composite
- actions/checkout v2 composite
- actions/upload-artifact master composite
- r-lib/actions/setup-pandoc master composite
- r-lib/actions/setup-r master composite