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GitHub / pritchardlabatpsu / cga
CERES predictions based on functional and genomic features
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/pritchardlabatpsu%2Fcga
Stars: 0
Forks: 1
Open Issues: 0
License: mit
Language: Jupyter Notebook
Repo Size: 16.8 MB
Dependencies:
32
Created: almost 4 years ago
Updated: over 2 years ago
Last pushed: over 2 years ago
Last synced: about 1 year ago
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Dependencies
environment.yml
conda
- pip
- python 3.7.*
- r-base 3.6.1
- r-corrr
- r-gprofiler2 0.2.0
- r-kernsmooth
- r-knitr
- r-tidyverse
requirements.txt
pypi
- Boruta ==0.3
- Keras ==2.3.1
- Keras-Applications ==1.0.8
- Keras-Preprocessing ==1.1.0
- Theano ==1.0.4
- jupyter *
- jupyterlab *
- jupytext ==1.5.2
- matplotlib >=3.0,<4.0
- matplotlib_venn ==0.11.5
- networkx ==2.4
- numpy ==1.18.1
- pandas >=1.0,<2.0
- patsy ==0.5.1
- plotly ==4.9.0
- python-louvain ==0.14
- scikit-learn ==0.22.1
- scipy ==1.4.1
- seaborn ==0.10.1
- statsmodels ==0.11.1
- tensorflow >=2.5.1
- termcolor ==1.1.0
- tqdm ==4.46.1
- xlsxwriter ==3.0.2