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GitHub / shaniAmare / scPipe
a pipeline for single cell data analysis
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/shaniAmare%2FscPipe
Fork of LuyiTian/scPipe
Stars: 1
Forks: 3
Open Issues: 0
License: None
Language: HTML
Repo Size: 156 MB
Dependencies:
67
Created: almost 5 years ago
Updated: over 1 year ago
Last pushed: 7 months ago
Last synced: 7 months ago
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Dependencies
DESCRIPTION
cran
- R >= 4.2.0 depends
- SingleCellExperiment * depends
- AnnotationDbi * imports
- BiocGenerics * imports
- Biostrings * imports
- DropletUtils * imports
- GGally * imports
- GenomicAlignments * imports
- GenomicRanges * imports
- IRanges * imports
- MASS * imports
- Matrix >= 1.5.0 imports
- MultiAssayExperiment * imports
- Rcpp >= 0.11.3 imports
- Rhtslib * imports
- Rsamtools * imports
- Rsubread * imports
- S4Vectors * imports
- SummarizedExperiment * imports
- basilisk * imports
- biomaRt * imports
- data.table * imports
- dplyr * imports
- flexmix * imports
- ggplot2 * imports
- glue >= 1.3.0 imports
- grDevices * imports
- graphics * imports
- hash * imports
- magrittr * imports
- mclust * imports
- methods * imports
- org.Hs.eg.db * imports
- org.Mm.eg.db * imports
- purrr * imports
- reshape * imports
- reticulate * imports
- rlang * imports
- robustbase * imports
- rtracklayer * imports
- scales * imports
- stats * imports
- stringr * imports
- tibble * imports
- tidyr * imports
- tools * imports
- utils * imports
- BiocStyle * suggests
- DT * suggests
- GenomicFeatures * suggests
- RANN * suggests
- RColorBrewer * suggests
- countreg * suggests
- grid * suggests
- igraph * suggests
- kableExtra * suggests
- knitr * suggests
- locStra * suggests
- plotly * suggests
- readr * suggests
- reshape2 * suggests
- rmarkdown * suggests
- scater >= 1.11.0 suggests
- shiny * suggests
- testthat * suggests
- umap * suggests
- xml2 * suggests