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GitHub / upendrak / bcbio-nextgen
Validated, scalable, community developed variant calling and RNA-seq analysis
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/upendrak%2Fbcbio-nextgen
Fork of bcbio/bcbio-nextgen
Stars: 0
Forks: 0
Open Issues: 0
License: mit
Language: Python
Repo Size: 18.2 MB
Dependencies:
43
Created: almost 9 years ago
Updated: about 6 years ago
Last pushed: almost 9 years ago
Last synced: 5 months ago
Files
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Readme
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Dependencies
Dockerfile
docker
- stackbrew/ubuntu 14.04 build
requirements.txt
pypi
- Cython >=0.19
- Logbook >=0.6.0
- PyVCF >=0.6.7
- PyYAML >=3.10
- arrow >=0.4.4
- awscli >=1.7.14
- azure >=0.11.1
- bcbio-nextgen ==0.9.0
- bioblend >=0.4.3
- biopython >=1.61
- boto >=2.34.0
- chanjo >=2.0.2
- click >=3.3
- cnvkit >=0.3.4
- cutadapt ==1.4.2
- cyvcf >=0.1.11
- fabric >=1.7.0
- fadapa >=0.3.1
- gffutils >=0.8.4rc1
- ipython >=2.0.0
- ipython-cluster-helper >=0.4.6
- joblib >=0.8.4
- lxml >=3.3.5
- msgpack-python >=0.4.0
- nose >=1.3.0
- openpyxl >=1.6.1,<2.0.0
- pandas >=0.14.1
- path.py >=7.0
- progressbar >=2.3.0
- psutil >=1.2.0
- pybedtools >=0.6.8
- pysam >=0.8.2.1
- python-dateutil >=2.1
- pythonpy >=0.3.6
- pyzmq >=2.2.0
- scikit-learn >=0.15.2
- seaborn >=0.5.0
- sh >=1.07
- tabulate >=0.7.3
- toolz >=0.7.1
- tornado >=3.1.0