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GitHub / wahabk / colloidoscope
A deep learning approach for particle detection from super-resolution microscopy.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/wahabk%2Fcolloidoscope
Stars: 2
Forks: 0
Open Issues: 0
License: mit
Language: HTML
Repo Size: 382 MB
Dependencies:
158
Created: over 3 years ago
Updated: 2 months ago
Last pushed: about 2 months ago
Last synced: about 2 months ago
Topics: deep-learning, particle-physics, python, pytorch, soft-matter
Files
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Readme
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Dependencies
- actions/checkout v3 composite
- actions/setup-python v3 composite
Dockerfile
docker
- pytorch/pytorch 1.12.1-cuda11.3-cudnn8-runtime build
requirements.txt
pypi
- Babel ==2.9.1
- HeapDict ==1.0.1
- Jinja2 ==3.0.3
- Mako ==1.1.5
- Markdown ==3.3.6
- MarkupSafe ==2.0.1
- Pillow ==8.4.0
- Pint ==0.18
- PyOpenGL ==3.1.5
- PyQt5 ==5.15.6
- PyQt5-Qt5 ==5.15.2
- PyQt5-sip ==12.9.0
- PyWavelets ==1.1.1
- PyYAML ==6.0
- Pygments ==2.10.0
- QtPy ==1.11.2
- Sphinx ==4.2.0
- Werkzeug ==2.0.2
- absl-py ==1.0.0
- alabaster ==0.7.12
- appdirs ==1.4.4
- astroid ==2.4.1
- attrs ==21.2.0
- backcall ==0.2.0
- brotlipy ==0.7.0
- cached-property ==1.5.2
- cachetools ==4.2.4
- cachey ==0.2.1
- certifi ==2021.10.8
- cffi ==1.15.0
- charset-normalizer ==2.0.7
- cloudpickle ==2.0.0
- cppimport ==21.3.7
- cycler ==0.11.0
- dask ==2021.11.1
- dataclasses ==0.6
- debugpy ==1.5.1
- decorator ==4.4.2
- docstring-parser ==0.12
- docutils ==0.17.1
- entrypoints ==0.3
- freetype-py ==2.2.0
- fsspec ==2021.11.0
- google-auth ==2.3.3
- google-auth-oauthlib ==0.4.6
- grpcio ==1.42.0
- gsd ==2.5.0
- h5py ==2.10.0
- hsluv ==5.0.2
- idna ==3.3
- imageio ==2.10.3
- imageio-ffmpeg ==0.4.5
- imagesize ==1.3.0
- importlib-metadata ==4.8.2
- importlib-resources ==5.4.0
- iniconfig ==1.1.1
- ipykernel ==6.5.0
- ipython ==7.29.0
- ipython-genutils ==0.2.0
- isort ==4.3.21
- jedi ==0.18.0
- jsonschema ==4.2.1
- jupyter-client ==7.0.6
- jupyter-core ==4.9.1
- kiwisolver ==1.3.1
- lazy-object-proxy ==1.4.3
- llvmlite ==0.37.0
- locket ==0.2.1
- magicgui ==0.3.3
- matplotlib ==3.3.4
- matplotlib-inline ==0.1.3
- mccabe ==0.6.1
- napari ==0.4.12
- napari-console ==0.0.4
- napari-plugin-engine ==0.2.0
- napari-svg ==0.1.5
- nest-asyncio ==1.5.1
- networkx ==2.5.1
- numba ==0.54.1
- numpy ==1.20.0
- numpydoc ==1.1.0
- oauthlib ==3.1.1
- opencv-python-headless ==4.5.4.58
- packaging ==21.2
- pandas ==1.3.4
- parso ==0.8.2
- partd ==1.2.0
- pathlib2 ==2.3.6
- pexpect ==4.8.0
- pickleshare ==0.7.5
- pluggy ==0.13.1
- proglog ==0.1.9
- prompt-toolkit ==3.0.22
- protobuf ==3.19.1
- psutil ==5.8.0
- psygnal ==0.2.0
- ptyprocess ==0.7.0
- py ==1.10.0
- pyasn1 ==0.4.8
- pyasn1-modules ==0.2.8
- pybind11 ==2.8.1
- pycparser ==2.21
- pydantic ==1.8.2
- pylint ==2.5.2
- pyparsing ==2.4.7
- pyrsistent ==0.18.0
- pytest ==6.2.2
- python-dateutil ==2.8.2
- pytz ==2021.3
- pyzmq ==22.3.0
- qtconsole ==5.2.0
- requests ==2.26.0
- requests-oauthlib ==1.3.0
- rsa ==4.7.2
- scikit-image ==0.17.2
- scipy ==1.7.2
- six ==1.16.0
- snowballstemmer ==2.2.0
- sphinxcontrib-applehelp ==1.0.2
- sphinxcontrib-devhelp ==1.0.2
- sphinxcontrib-htmlhelp ==2.0.0
- sphinxcontrib-jsmath ==1.0.1
- sphinxcontrib-qthelp ==1.0.3
- sphinxcontrib-serializinghtml ==1.1.5
- superqt ==0.2.4
- tensorboard ==2.7.0
- tensorboard-data-server ==0.6.1
- tensorboard-plugin-wit ==1.8.0
- tifffile ==2020.9.3
- toml ==0.10.1
- toolz ==0.11.2
- torch ==1.10.0
- tornado ==6.1
- tqdm ==4.62.3
- traitlets ==5.1.1
- typing-extensions ==3.10.0.2
- urllib3 ==1.26.7
- vispy ==0.9.3
- wcwidth ==0.2.5
- wrapt ==1.13.3
- zipp ==3.6.0
setup.py
pypi
- h5py *
- lxml *
- matplotlib *
- napari *
- numpy *
- pandas *
- pathlib2 *
- scikit-image *
- scikit-learn *
- scipy *
- seaborn *
- torch *
- torchio *
- tqdm *