GitHub topics: soft-matter
glotzerlab/fresnel
Publication quality path tracing in real time.
Language: C++ - Size: 20.3 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 123 - Forks: 7
amepproject/amep
The Active Matter Evaluation Package (AMEP) - a Python library for the analysis of particle-based and continuum simulation data of soft and active matter systems
Language: Python - Size: 71.4 MB - Last synced at: 4 days ago - Pushed at: 11 days ago - Stars: 21 - Forks: 5
DeepTrackAI/DeepTrack2
DeepTrack2 is a modular Python library for generating, manipulating, and analyzing image data pipelines for machine learning and experimental imaging.
Language: Jupyter Notebook - Size: 624 MB - Last synced at: 7 days ago - Pushed at: 7 days ago - Stars: 208 - Forks: 57
Morpho-lang/morpho
The Morpho language 🦋. Morpho is a small embeddable language for scientific computing applications.
Language: C - Size: 130 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 144 - Forks: 18
espressomd/espresso
The ESPResSo package
Language: C++ - Size: 153 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 249 - Forks: 191
ludwig-cf/ludwig
A lattice Boltzmann code for complex fluids
Language: C - Size: 186 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 60 - Forks: 39
wahabk/colloidoscope 📦
A deep learning approach for particle detection from super-resolution microscopy.
Language: HTML - Size: 402 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 5 - Forks: 0
simongravelle/lammps-input-files
LAMMPS inputs and data files
Size: 131 MB - Last synced at: 4 months ago - Pushed at: 11 months ago - Stars: 256 - Forks: 103
sfalmo/NeuralDFT-Tutorial
Neural functional theory for inhomogeneous fluids - Tutorial
Language: Jupyter Notebook - Size: 10 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 13 - Forks: 0
simongravelle/publication-data
Data and scripts from recent publications
Language: Jupyter Notebook - Size: 103 MB - Last synced at: 8 days ago - Pushed at: 5 months ago - Stars: 8 - Forks: 0
ovitrac/Pizza3
Toolkit for multiscale modeling with LAMMPS in Python 3.x. It integrates with LAMMPS-GUI and leverages Large Language Models for rapid prototyping.
Language: HTML - Size: 432 MB - Last synced at: 4 months ago - Pushed at: 5 months ago - Stars: 4 - Forks: 3
Ramy-Badr-Ahmed/Bending-Stiffness
Bending Stiffness of Actin Filaments - https://doi.org/10.5281/zenodo.12808969
Language: Java - Size: 2.84 MB - Last synced at: 5 months ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0
grasingerm/polymer-stats
Computational statistical mechanics of field-responsive polymer chains
Language: Julia - Size: 149 KB - Last synced at: 4 days ago - Pushed at: 8 months ago - Stars: 6 - Forks: 3
RadostW/PyGRPY
Python port of Generalized Rotne Prager Yamakawa hydrodynamic tensors.
Language: Python - Size: 62.5 KB - Last synced at: 4 days ago - Pushed at: 6 months ago - Stars: 4 - Forks: 2
sudo-shaka/OpenCL_DPM
OpenCL GPU accelerated implementation of the deformable particle model in 2D and 3D
Language: C++ - Size: 66.4 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0
RadostW/saxs_single_bead
All Python package to compute small angle X-ray scattering (SAXS) profiles in one-bead-per-residue approximation with numpy
Language: Python - Size: 1.15 MB - Last synced at: 20 days ago - Pushed at: almost 3 years ago - Stars: 2 - Forks: 0
sfalmo/NeuralDFT
Neural functional theory for inhomogeneous fluids: Fundamentals and applications
Language: Python - Size: 178 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 8 - Forks: 0
RadostW/stochastic
Pychastic is a stochastic differential equations integrator written entirely in python.
Language: Python - Size: 13.8 MB - Last synced at: 4 days ago - Pushed at: 7 months ago - Stars: 12 - Forks: 3
SCiarella/TLS_ML_exploration
Active learning to explore glassy landscapes
Language: Python - Size: 192 MB - Last synced at: 4 months ago - Pushed at: 10 months ago - Stars: 8 - Forks: 0
PhyBi/Collective-Cell-Dynamics
2D simulation of confluent cell collectives based on a coarse-grained bead-spring model
Language: Fortran - Size: 625 KB - Last synced at: 9 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 2
PKua007/rampack
Random And Maximal PACKing PACKage
Language: C++ - Size: 4.25 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 2 - Forks: 1
duxfrederic/ddmsoft
Python GUI for the quick processing, analysis and plotting of differential dynamic microscopy data
Language: Python - Size: 1.37 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 4 - Forks: 0
yketa/UBC_2018_Wiki
Wiki of a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.
Language: HTML - Size: 371 MB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 1
yketa/active_particles
Code developed for a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.
Language: Python - Size: 695 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 2
yketa/shear_ellipsoids
Code developed for a research project at Umeå universitet focusing on sheared packings of ellipsoids, supervised by Peter Olsson.
Language: Shell - Size: 99.6 KB - Last synced at: about 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
yketa/Umea_2017_Wiki
Notes of a research project at Umeå universitet focusing on sheared packings of ellipsoids, supervised by Peter Olsson.
Language: HTML - Size: 6.44 MB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 0
madgal/VoronoiAnalysis
Python code that can be used to analyze molecular dynamics simulations of proteins/polymers solvated in water. The first and second hydration shells are calculated, the molecular volume, the partial molar volume, and the number of waters associated with each side chain are calculated. This is specifically for PNIPAM but can be modified fairly easily to suit other polymers/protiens. The MDAnalysis library is used for parsing trajectories. Voronio polygons are created using the pyvoro wrapper of Voro++.
Language: Python - Size: 147 KB - Last synced at: almost 2 years ago - Pushed at: over 3 years ago - Stars: 6 - Forks: 1
alextbradley/Contact-angle-hysteresis-PRF
Code to run simulations and produce figures for Bradley et al. 2021, "Droplet trapping in bendotaxis caused by contact angle hysteresis"
Language: MATLAB - Size: 11.3 MB - Last synced at: over 2 years ago - Pushed at: almost 3 years ago - Stars: 1 - Forks: 0
lukaselflein/charge_optimization_folderstructure
Create a consistent, documented pipline and folder structure for self-consistent MD charge optimization.
Language: Python - Size: 655 KB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0
fengwangPhysics/soft-matter-journal-club
soft matter journal club
Size: 4.54 MB - Last synced at: over 2 years ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
