Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: soft-matter

Repositories

espressomd/espresso

The ESPResSo package

Language: C++ - Size: 152 MB - Last synced: 2 days ago - Pushed: 3 days ago - Stars: 218 - Forks: 181

glotzerlab/fresnel

Publication quality path tracing in real time.

Language: C++ - Size: 19.5 MB - Last synced: 6 days ago - Pushed: 6 days ago - Stars: 107 - Forks: 8

simongravelle/publication-data

Data from recent publications

Language: Jupyter Notebook - Size: 101 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 2 - Forks: 0

amepproject/amep

The Active Matter Evaluation Package (AMEP) - a Python library for the analysis of particle-based and continuum simulation data of soft and active matter systems

Language: Python - Size: 36.6 MB - Last synced: 21 days ago - Pushed: 21 days ago - Stars: 2 - Forks: 1

PhyBi/Collective-Cell-Dynamics

2D simulation of confluent cell collectives based on a coarse-grained bead-spring model

Language: Fortran - Size: 596 KB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 0 - Forks: 0

Morpho-lang/morpho

The Morpho language 🦋. Morpho is a small embeddable language for scientific computing applications.

Language: C - Size: 152 MB - Last synced: 29 days ago - Pushed: 29 days ago - Stars: 26 - Forks: 9

ludwig-cf/ludwig

A lattice Boltzmann code for complex fluids

Language: C - Size: 186 MB - Last synced: 4 days ago - Pushed: 5 days ago - Stars: 53 - Forks: 34

sfalmo/NeuralDFT-Tutorial

Neural functional theory for inhomogeneous fluids - Tutorial

Language: Jupyter Notebook - Size: 9.94 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 6 - Forks: 0

RadostW/saxs_single_bead

All Python package to compute small angle X-ray scattering (SAXS) profiles in one-bead-per-residue approximation with numpy

Language: Python - Size: 1.15 MB - Last synced: 26 days ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0

simongravelle/lammps-input-files

LAMMPS inputs and data files

Size: 131 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 202 - Forks: 85

wahabk/colloidoscope

A deep learning approach for particle detection from super-resolution microscopy.

Language: HTML - Size: 382 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 2 - Forks: 0

PKua007/rampack

Random And Maximal PACKing PACKage

Language: C++ - Size: 4.84 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 1

duxfrederic/ddmsoft

Python GUI for the quick processing, analysis and plotting of differential dynamic microscopy data

Language: Python - Size: 1.37 MB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 4 - Forks: 0

sfalmo/NeuralDFT

Neural functional theory for inhomogeneous fluids: Fundamentals and applications

Language: Python - Size: 160 MB - Last synced: 8 months ago - Pushed: 8 months ago - Stars: 0 - Forks: 0

RadostW/stochastic

Pychastic is a stochastic differential equations integrator written entirely in python.

Language: Python - Size: 13.8 MB - Last synced: 13 days ago - Pushed: 7 months ago - Stars: 8 - Forks: 3

yketa/UBC_2018_Wiki

Wiki of a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.

Language: HTML - Size: 371 MB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 0 - Forks: 1

yketa/active_particles

Code developed for a research project at the University of British Columbia focusing on a simple model of active particles, supervised by Jörg Rottler.

Language: Python - Size: 695 KB - Last synced: 10 months ago - Pushed: almost 5 years ago - Stars: 2 - Forks: 2

yketa/shear_ellipsoids

Code developed for a research project at Umeå universitet focusing on sheared packings of ellipsoids, supervised by Peter Olsson.

Language: Shell - Size: 99.6 KB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

yketa/Umea_2017_Wiki

Notes of a research project at Umeå universitet focusing on sheared packings of ellipsoids, supervised by Peter Olsson.

Language: HTML - Size: 6.44 MB - Last synced: 10 months ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

SCiarella/TLS_ML_exploration

Iterative training to explore glassy landscapes

Language: Python - Size: 192 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 2 - Forks: 0

RadostW/PyGRPY

Python port of Generalized Rotne Prager Yamakawa hydrodynamic tensors.

Language: Python - Size: 84 KB - Last synced: 15 days ago - Pushed: 4 months ago - Stars: 1 - Forks: 2

Python code that can be used to analyze molecular dynamics simulations of proteins/polymers solvated in water. The first and second hydration shells are calculated, the molecular volume, the partial molar volume, and the number of waters associated with each side chain are calculated. This is specifically for PNIPAM but can be modified fairly easily to suit other polymers/protiens. The MDAnalysis library is used for parsing trajectories. Voronio polygons are created using the pyvoro wrapper of Voro++.

Language: Python - Size: 147 KB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 6 - Forks: 1